Yersinia pseudotuberculosis IP 31758 (serotype O 1b): YpsIP31758_2810
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Entry
YpsIP31758_2810 CDS
T00570
Name
(GenBank) ATP-dependent RNA helicase, DEAD/DEAH box family
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ypi
Yersinia pseudotuberculosis IP 31758 (serotype O:1b)
Pathway
ypi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ypi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YpsIP31758_2810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ypi03019
]
YpsIP31758_2810
Enzymes [BR:
ypi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
YpsIP31758_2810
Messenger RNA biogenesis [BR:
ypi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YpsIP31758_2810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
AAA_22
Shikimate_DH
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABS49289
UniProt:
A0A0U1R223
LinkDB
All DBs
Position
complement(3174341..3175696)
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AA seq
451 aa
AA seq
DB search
MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSQDQQPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMI
GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDI
ERLLKREIPRIALDGYEPDPSIKADPIQNGRQGRGAQRPGMGRGSSAGRPQNGGGAAGRG
DSRNSRPRSQADGQRRPAGPSSRGRSRNPGE
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattctctcggcctaaacgccgacatcctgcgtgctgttgaagagcagggc
taccttgtgccgacgccaattcaacgtcaggcaatccctgtagtactggaaggccgcgat
ttgatggccagtgcgcaaacgggtacgggtaaaaccgctggtttcaccttgccgctattg
caactgcttagccaagatcaacaacccattaagggccgccgtccggtacgagcattgatt
ttgacgccaacccgtgagctggccgcgcagattgacgaaaacgtacagagttatagcaaa
tacctgaaacttcgctcactggtggtatttggtggcgttagcattaacccacagatgatg
aaattgcgtggtggcgtcgatattttagtcgcgacacctggccgtttactggatctggaa
catcaaaacgcggttgatttgtccaaaattgaaattttagtattggacgaagctgaccgt
atgctggatatgggctttattcacgatatccgccgtgtattagccaaattaccggctaaa
cgtcagaatttgctgttctctgccaccttctctgatgagattaaaggattggccagcaaa
ttgttgcacaacccagcctctgttgaagtggctcgccgtaatacggcgtcagagcagatc
gcccaaagcgttcactttgtcgataaaaaccgtaagcgtgagctgttgtctcagatgatt
ggcgaaggtaactggcagcaagtgctggtgtttaaccgcactaagcacggcgcgaaccat
ttagctgaacagttaaataaagacggcattactgcggcggcaatccacggtaataaaagt
cagggcgcacgtactcgtgcactggccgattttaaagacggtaaaatccgtgtgttggtc
gcgacggatatcgctgcccgtggtctggatatcgaccagttacctcacgtggttaactat
gaattgccaaacgttccggaagattacgttcaccgtattggccgtactggccgcgcggaa
cggaccggggaagcgatttcgctggtttgtgtcgatgaacataaactgctgcgtgatatt
gaacgtttattaaaacgtgaaattccacgtatcgcacttgatggctatgagccggatcca
agcattaaagctgatccaattcaaaatggccgtcagggccgtggtgcacaacgtccagga
atgggccgtggcagcagcgcgggtcgtccgcagaatgggggcggtgcagcaggtcgcggt
gatagccgcaacagccgcccacgcagccaggctgatggtcaacgccgtccggcaggccca
tcgtctcgcggtcgtagccgtaatccaggcgaataa
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