Yersinia pseudotuberculosis IP 31758 (serotype O 1b): YpsIP31758_3859
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Entry
YpsIP31758_3859 CDS
T00570
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ypi
Yersinia pseudotuberculosis IP 31758 (serotype O:1b)
Pathway
ypi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ypi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
YpsIP31758_3859 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ypi03021
]
YpsIP31758_3859 (rpoC)
03400 DNA repair and recombination proteins [BR:
ypi03400
]
YpsIP31758_3859 (rpoC)
Enzymes [BR:
ypi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
YpsIP31758_3859 (rpoC)
Transcription machinery [BR:
ypi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
YpsIP31758_3859 (rpoC)
DNA repair and recombination proteins [BR:
ypi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
YpsIP31758_3859 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ABS49557
UniProt:
A7FNI2
LinkDB
All DBs
Position
complement(4345680..4349900)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEILREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEEIRNTEGESITRTSIIDTTVGRAILWMIVPQGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEAKAGIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMDNLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGIVMTPVIEGGDVKEPLRDRVL
GRVTAEEVIKPGSADILVPRNTLLDEKWCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
SNVKFVTNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGAEVQGGETVANW
DPHIMPVVTEVSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGNDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVDAGSTDFLEGEQAEMSRVKIANRKLAAEGKIEATFTRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRKAQGEAPV
VPQVSADEATANLAELLNAGFGNNKG
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcatcgccagacatgatccgttcatggtcattcggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
atctttggcccagtaaaagattacgaatgcctgtgcggtaagtacaagcgtttaaaacac
cgtggtgttatttgtgagaaatgcggcgttgaagtgactcaaactaaagtgcgccgtgag
cgtatgggtcacatcgaactggcttctccaactgcgcacatctggttcctgaaatcgctg
ccatctcgtatcggtttgctgctggatatgccattacgtgacatcgaacgtgtactgtac
ttcgaatcctatgtggttattgaaggcggtatgaccaacctggaacgtcgccagattctg
actgaagagcagtatctggatgcgttggaagagtttggtgatgagttcgacgcgaaaatg
ggcgccgaggctattcaggccctgttgaaaaacatggatctggaagctgagtgcgagatc
ctgcgtgaagaattgaacgaaacaaattctgaaaccaagcgtaagaagctgaccaagcgt
atcaagttgctggaagcgttcgtacagtctggcaacaagccagagtggatgatcctgacc
gtgctgcctgtgttgccgccagatctgcgtccattggttccgttggatggtggtcgcttt
gcgacttccgatctgaacgatttgtatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggacttggcggcaccggacatcatcgtacgtaacgaaaagcgtatgctgcaa
gaagcagtagatgcattgctggataacggccgtcgcggtcgtgcgattaccggctctaac
aagcgtccgttgaagtcactggctgacatgattaaaggtaagcaaggtcgtttccgtcag
aacttgctgggtaaacgtgttgactactcaggtcgttcggttatcaccgttggtccatac
ctgcgtctgcatcagtgcggtctgcctaagaaaatggctcttgagctgtttaaaccgttc
atctacggcaagctggaattgcgtggtcttgctaccaccatcaaagccgccaagaagatg
gttgagcgtgaagaagcggttgtttgggatatcctggatgaagttatccgcgaacaccca
gtgctgctgaaccgtgcaccaacccttcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaggcaatccagttgcacccattggtttgtgcggcatataacgccgac
ttcgatggtgaccaaatggctgtccacgtaccgctgacactggaagctcagttagaagcg
cgtgcgttaatgatgtctaccaacaacatcctgtcacccgcgaacggcgagccaatcatc
gttccttctcaggacgttgtattgggtctgtactacatgacccgcgactgtgttaacgcc
aaaggcgaaggcatggttctgactggcccgaaagaagctgagcgtatttatcgcgctggc
ctggcatctctgcatgcccgcgtaaaagtacgtattaccgaagaaattcgtaataccgaa
ggcgaaagcattacgcgtaccagcattatcgatacgactgtaggtcgtgctattttgtgg
atgatcgtcccgcaaggcctgccttactctatcgttaaccagccgctgggtaaaaaagct
atctctaagatgctgaacacttgttaccgcatcttgggcttgaagccaacggttatcttt
gctgaccagatcatgtacaccggttttgcttacgcagcacgctcaggcgcctctgtaggt
atcgatgacatggttatcccagaagcgaaagcggggatcatcgaagaagctgaaactgaa
gttgctgagatccaagaacagttccaatctggtctggtcacggcaggcgaacgttataac
aaagtgatcgatatctgggctgcggctaacgaacgtgttgctaaagcgatgatggataac
ttgtcggttgaggatgttgtcaaccgtgatggcgttgttgaacagcaagtttcattcaac
agcatcttcatgatggccgactccggtgcgcgtggttctgccgcacagattcgtcagctg
gcaggtatgcgtggtctgatggctaagccagacggctcgatcattgaaacgccaatcacc
gcgaacttccgtgaaggtttgaacgtacttcagtacttcatctcaacccacggtgcgcgt
aaaggtttggcggataccgcattgaaaactgcgaactccggttacctgacccgtcgttta
gttgacgtggcacaggatctggtggtgactgaggatgattgtggtacccataacggtatc
gtgatgaccccggttatcgaaggtggtgatgttaaagagccactgcgtgatcgcgtactg
ggtcgtgtgactgcagaagaagttatcaagccaggttcggctgatattctggttccgcgt
aacaccctgctggacgaaaaatggtgtgatctgttagaagaaaactccgtcgacagcgtt
aaagttcgctctgtagtaagctgtgaaactgacttcggtgtgtgtgctaactgctatggt
cgcgacctggcacgtggccacatcatcaacaaaggtgaagcggttggtgttattgcagca
cagtccatcggtgagccgggtactcagcttacgatgcgtacgttccacattggtggtgcg
gcatctcgtgcggcagcagaatccagcatccaggttaagaacaaaggcagcttgaaactg
agcaacgtcaagttcgtgaccaatgcggctggcaagctggttattacgtctcgtaatacc
gagctgaagctgatcgacgaattcggtcgtaccaaagaaagctataaagtgccttacggt
gcggtaatggctaaaggcgatggcgcagaagttcagggcggcgaaaccgttgctaactgg
gatccgcacatcatgccagtggtcaccgaagtgagcggcttcattcgcttcgccgacatg
gttgatggccagaccattactcgccagaccgacgaactgactggtttgtcttctctggtc
gttctggacagtgcagagcgtacgggtagcggtaaagacctgcgtccagcactgaaaatc
gttgatgccaaaggcaatgacgtattgatcccaggtactgatatgcctgctcaatacttc
ctgccaggtaaagcgattgtacagctggaagacggtattcagatcggtgcgggtgatacc
ttggcgcgtattcctcaggaatcaagcggtaccaaggatattaccggtggtctgccacgt
gttgctgacttgttcgaagcacgtcgtccgaaagagcctgcaatcctggctgaaatcagc
gggatcatctcgttcggtaaagagaccaaaggcaagcgtcgtctggtgatctcaccgttg
gatggtagcgatgcatacgaagagatgattccgaaatggcgtcagcttaacgtgttcgaa
ggtgaagttgtggaacgcggtgacgtggtttccgatggcccagaatctccacatgacatt
ctgcgtctgcgtggcgttcacgcggttacccgctacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacattgaagttatcgttcgtcagatg
ctgcgtaaaggcactatcgttgatgcaggtagcaccgacttcctggaaggcgagcaggca
gaaatgtcccgcgttaaaatcgctaaccgtaagctggcagcagaaggcaaaattgaggct
acgttcactcgtgacctgctgggtatcaccaaggcatccttggcgaccgagtccttcatc
tctgcggcttcgttccaggaaaccacgcgcgttcttactgaagcggcagttgccggtaaa
cgtgatgaattgcgtggcctgaaagaaaacgtaatcgtaggccgtctgatcccagccggt
accggttatgcttatcatcaggaccgtatgcgccgtaaagcacagggtgaagcgcctgtt
gttccacaagtcagcgcggatgaagcgactgcaaacctggccgaattgcttaacgccggt
tttggtaacaacaaaggctaa
DBGET
integrated database retrieval system
