KEGG   Yersinia pestis Harbin35: CH55_3390
Entry
CH55_3390         CDS       T03717                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
ypj  Yersinia pestis Harbin35
Pathway
ypj02024  Quorum sensing
ypj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ypj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CH55_3390 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    CH55_3390 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ypj03019]
    CH55_3390 (hfq)
   03036 Chromosome and associated proteins [BR:ypj03036]
    CH55_3390 (hfq)
Messenger RNA biogenesis [BR:ypj03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     CH55_3390 (hfq)
Chromosome and associated proteins [BR:ypj03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    CH55_3390 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AJK07871
LinkDB
Position
complement(3679986..3680291)
AA seq 101 aa
MAKGQSLQNPFLNALRRERVPVSIYLVNGIKLQGQVESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNTPSGSTNNYHGSNPSAPQQPQQDSDDAE
NT seq 306 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttgcaaaatccgttcctgaacgcattgcgtcgtgaacgggtt
ccggtttctatttatttagtgaatggtattaaactgcagggccaagttgagtcttttgat
cagtttgtcattctgttaaaaaatacagtcagccagatggtttataagcacgccatctct
actgttgtgccttctcgtccggtttcgcatcacagcaatactccgagcggtagcaccaat
aattatcatggtagtaatccgtctgcgccgcaacagccgcagcaggacagtgatgacgct
gaataa

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