Yersinia pestis Harbin35: CH55_3809
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Entry
CH55_3809 CDS
T03717
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ypj
Yersinia pestis Harbin35
Pathway
ypj03030
DNA replication
ypj03430
Mismatch repair
ypj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ypj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CH55_3809 (dnaE)
03430 Mismatch repair
CH55_3809 (dnaE)
03440 Homologous recombination
CH55_3809 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ypj03032
]
CH55_3809 (dnaE)
03400 DNA repair and recombination proteins [BR:
ypj03400
]
CH55_3809 (dnaE)
Enzymes [BR:
ypj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CH55_3809 (dnaE)
DNA replication proteins [BR:
ypj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CH55_3809 (dnaE)
DNA repair and recombination proteins [BR:
ypj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CH55_3809 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
MutS_II
Motif
Other DBs
NCBI-ProteinID:
AJK06903
LinkDB
All DBs
Position
4172845..4176327
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGA
GIKPIIGADFYVQSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAGPIIDRDW
LIKHKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYLELIRTGRPDEEN
YLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQFM
RDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGEMSTEDFLVEKAKQGL
EERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDPGMTLEKAFAAEPQ
LAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLEDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPAEM
AKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKLIMSGAFDRLGPHRAALMS
SLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQVVLDGERETLGLY
LTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARELMDISEAREKY
ASGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQREDARARLRFGATWRVTPTD
RLLIDLRTLVGNEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacctcgttttgtccacctgcgtgttcatagcgattattccatgatcgatgga
ttagctaagattggacctttggtgaaaagagctgctgcattaggtatgcctgctctggct
attaccgattttactaacctctgtggcctggtgaaattctacggcagcgcgcatggtgcg
gggattaaacccatcatcggtgctgacttctacgtacaaagtgaaatactgggtgatgaa
ttagctcacctcacggttttggctcgcaataatgaaggctatcaaaatctgactttattg
atctcagaagcctaccaacggggttatggcgctgcgggtcctatcattgatcgcgattgg
ctgatcaaacataaagaaggactcattctgctgtctggtggccgaatgggggatgtgggc
aaatttctgctacggggtaaccaggttcaggttgatcaatgtctcgccttttatcaggaa
cactttccagactgctattacctcgaacttattcgaaccgggcgtccagacgaagaaaac
tatcttcatgctgccgtggcattggccactgagcgtggtttacctgtcgttgcgaccaat
gatgtgcgttttattgatgaatcggattttgatgcccatgaaatccgtgtcgctatccat
gatggttttacattggtcgatcctaaacggccgaagaattacagccctcagcagtttatg
cgcgatgaagaacagatgtgtgagctgttcgctgatattccagaagcgttgatcaacagc
gttgagatagccaaacgctgtaatgtcactattcgccttggggaatatttcttaccgcag
ttccccacaggggagatgagtacagaagattttctggtagaaaaagccaaacaaggtttg
gaagaacgtttggaatttctgtttccggaccctgaggttaggctgcaaaaacggccagaa
tatgatgaacgtctggatatcgagctcaaagttatcaaccaaatgggcttccctggttac
ttcctgattgtaatggagtttatccagtggtcgaaagataacggcgtaccggtggggccg
gggcgtggctctggtgcaggctcattggtggcttatgccctgaaaattactgatattgac
ccactggaatttgatctactgttcgagcgcttccttaatccggaacgtgtatcgatgcct
gacttcgacgttgacttctgtatggagaaacgtgatctggtgatcgaacacgtggcggaa
atgtatggccgcgatgcggtttcccagataattaccttcggtaccatggcggctaaagcg
gtcatccgcgatgtcggccgtgtattaggccatccctatggctttgttgatcggatctca
aaattaatcccactcgatccggggatgacactggaaaaagcgtttgcagcggagccacag
ctagctgaaatttatgaagctgatgaagaggtcagggcgctaattgatatggcgcgtaag
ctggaaggagtaacgcgaaacgccgggaaacatgctggaggcgtggttattgcccccact
aagattaccgattttgccccactctattgtgatgcggaaggcaataacccagttacgcag
tttgataaaaatgatgtggaatatgctgggctggtgaagtttgacttcctcggtctacgt
acactaaccatcattaattgggcgttggagatgattaacgcccggcgcgctaaaactgga
ttggaacccattgatatcgcctctattccgctggaggataaaaaaagcttcgatatgctg
caacgttcggaaacgacagcagtattccagctggaatccagagggatgaaagacttgatc
aagcgcctgaagcccgactgcttcgaggacatgatcgccttagtggcgttatttcgtccc
ggtccgttacaatcagggatggttgataactttattgaccgtaaacacggccgggaagcg
atatcttacccagatattgagtggcaacatgaatccttgaaacctgtgcttgagccgacc
tacggcattatcttgtatcaggaacaggtcatgcaaattgcgcaggttctgtccggctac
tcactgggtggtgcggacatgttgcgtcgtgccatgggtaagaaaaaccctgctgagatg
gctaagcagcgttctgtatttgaagatggtgcgaaaaatcagggtattgatggtgagctg
gcgattaaaatctttgacctggttgagaaatttgcaggttacggttttaacaaatctcac
tcggcagcttatgcattagtctcctatcaaacgttgtggttaaaagcccattatccggct
gaatttatggctgcagtaatgaccgctgatatggataatacggacaaagtggtcggcttg
gtcgatgaatgctggcgtatggggctgaaaattctgccccctgacatcaacagcggtttg
taccatttccatgtaaacgatgatggcgaaattgtttatggtattggtgccattaaaggt
gtaggtgaggggccgatagaagccattctggaggcgcgtaaagaggggggctattttaaa
gagttatttgacctatgcgcccgtgtcgataccaaaaagcttaacaagcgtattttagaa
aaactgatcatgtccggtgcatttgaccgtttggggccacaccgtgcagcattgatgagt
tctctcggggatgcgcttaaagccgcagatcaacatgctaaagccgaagcaattggtcag
gtagatatgtttggtgtattagccgacgcgcctgagcaggttgagcaatcctatgccaat
gtgccgccatggcaggagcaggttgttttagatggtgaacgggaaacgctggggctgtat
ttaactggccatccgatcactcagtacctcaaggaaatcgaacgctatgccggtgggatg
cgtttgaaggatatgcatccgacggatcggggcaaaatgaccaccgcagtggggttggtg
atcgcggcaagggttatggtcacaaaacgtggtaatcgcattggtatttgtacgctagat
gaccgctctggtcgtctggaggtgatgttattcaccgatgcattggaaaaatatcagcat
ttattggaaaaagaccgtatcctgatagccaccggacaggtcagctttgatgactttagt
ggtgggcttaaaatgaccgcccgtgagttaatggacatcagtgaagctcgtgaaaaatat
gcaagtgggcttgctatctcgctgactgacaggcaaattgatgaccagcttttgaaccgt
ctccgtcagtcgttggaaccccatcgagcggggacgatcccagtacatctttattaccaa
cgggaagatgctcgcgcccggctgcggtttggagccacatggcgcgtgacgcccaccgat
cgcttattaatcgatttgcgaacgttggtaggtaatgagcaagtggaactggaatttgac
taa
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