Yersinia pestis KIM10+ (biovar Mediaevalis): y0485
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Entry
y0485 CDS
T00092
Symbol
rpoC
Name
(GenBank) RNA polymerase, beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ypk
Yersinia pestis KIM10+ (biovar Mediaevalis)
Pathway
ypk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ypk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
y0485 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ypk03021
]
y0485 (rpoC)
03400 DNA repair and recombination proteins [BR:
ypk03400
]
y0485 (rpoC)
Enzymes [BR:
ypk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
y0485 (rpoC)
Transcription machinery [BR:
ypk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
y0485 (rpoC)
DNA repair and recombination proteins [BR:
ypk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
y0485 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AAM84074
UniProt:
Q8D1H3
LinkDB
All DBs
Position
544195..548451
Genome browser
AA seq
1418 aa
AA seq
DB search
MPIRSNSDRSQSVKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRT
FKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELA
SPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERRQILTEEQYLDA
LEEFGDEFDAKMGAEAIQALLKNMDLEAECEILREELNETNSETKRKKLTKRIKLLEAFV
QSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAP
DIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVD
YSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVV
WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAV
HVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLT
GPKEAERIYRAGLASLHARVKVRITEEIRNTEGESITRTSIIDTTVGRAILWMIVPQGLP
YSIVNQPLGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPE
AKAGIIEEAETEVAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMDNLSVEDVVN
RDGVVEQQVSFNSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLN
VLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGIVMTPVIEG
GDVKEPLRDRVLGRVTAEEVIKPGSADILVPRNTLLDEKWCDLLEENSVDSVKVRSVVSC
ETDFGVCANCYGRDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAES
SIQVKNKGSLKLSNVKFVTNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDG
AEVQGGETVANWDPHIMPVVTEVSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERT
GSGKDLRPALKIVDAKGNDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQES
SGTKDITGGLPRVADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEE
MIPKWRQLNVFEGEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKI
NDKHIEVIVRQMLRKGTIVDAGSTDFLEGEQAEMSRVKIANRKLAAEGKIEATFTRDLLG
ITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD
RMRRKAQGEAPVVPQVSADEATANLAELLNAGFGNNKG
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
gtgcctatcaggtctaactccgacaggagccaatccgtgaaagacttattaaagtttctg
aaagcgcaaactaagaccgaagagtttgatgcgatcaaaattgctctggcatcgccagac
atgatccgttcatggtcattcggtgaagttaaaaagccggaaaccattaactaccgtacg
ttcaaaccagaacgtgacggccttttctgcgcccgtatctttggcccagtaaaagattac
gaatgcctgtgcggtaagtacaagcgtttaaaacaccgtggtgttatttgtgagaaatgc
ggcgttgaagtgactcaaactaaagtgcgccgtgagcgtatgggtcacatcgaactggct
tctccaactgcgcacatctggttcctgaaatcgctgccatctcgtatcggtttgctgctg
gatatgccattacgtgacatcgaacgtgtactgtacttcgaatcctatgtggttattgaa
ggcggtatgaccaacctggaacgtcgccagattctgactgaagagcagtatctggatgcg
ttggaagagtttggtgatgagttcgacgcgaaaatgggcgccgaggctattcaggccctg
ttgaaaaacatggatctggaagctgagtgcgagatcctgcgtgaagaattgaacgaaaca
aattctgaaaccaagcgtaagaaactgaccaagcgtatcaagttgctggaagcgttcgta
cagtctggcaacaagccagagtggatgatcctgaccgtgctgcctgtgttgccgccagat
ctgcgtccattggttccgttggatggtggtcgctttgcgacttccgatctgaacgatttg
tatcgtcgcgtgatcaaccgtaacaaccgtctgaaacgcctgctggacttggcggcaccg
gacatcatcgtacgtaacgaaaagcgtatgctgcaagaagcagtagatgcattgctggat
aacggccgtcgcggtcgtgcgattaccggctctaacaagcgtccgttgaagtcactggct
gacatgatcaaaggtaagcaaggtcgtttccgtcagaacttgctgggtaaacgtgttgac
tactcaggtcgttcggttatcaccgttggtccatacctgcgtctgcatcagtgcggtctg
cctaagaaaatggctcttgagctgtttaaaccgttcatctacggcaagctggaattgcgt
ggtcttgctaccaccatcaaagccgccaagaagatggttgagcgtgaagaagcggttgtt
tgggatatcctggatgaagttatccgcgaacacccagtgctgctgaaccgtgcaccaacc
cttcaccgtttgggtatccaggcgtttgaaccggttctgatcgaaggtaaggcaatccag
ttgcacccattggtttgtgcggcatataacgccgacttcgatggtgaccaaatggctgtc
cacgtaccgctgacactggaagctcagttagaagcgcgtgcgttaatgatgtctaccaac
aacatcctgtcacccgcgaacggcgagccaatcatcgttccttctcaggacgttgtattg
ggtctgtactacatgacccgcgactgtgttaacgccaaaggcgaaggcatggttctgact
ggcccgaaagaagctgagcgtatttatcgcgctggcttggcatctctgcatgcccgcgta
aaagtacgtattaccgaagaaattcgtaataccgaaggcgaaagcattacgcgtaccagc
attatcgatacgactgtaggccgtgctattttgtggatgatcgtcccgcaaggcctgcct
tactctatcgttaaccagccgctgggtaaaaaagctatctctaagatgctgaacacgtgt
taccgcatcttgggcttgaagccaacggttatctttgctgaccagatcatgtacaccggt
tttgcttacgcagcacgctcaggcgcctctgtaggtatcgatgacatggttatcccagaa
gcgaaagcggggatcatcgaagaagctgaaactgaagttgctgagatccaagaacagttc
caatctggtctggtcacggcaggcgaacgttataacaaagtgatcgatatctgggctgcg
gctaacgaacgtgttgctaaagcgatgatggataacttgtcggttgaggatgttgtcaac
cgtgatggcgttgttgaacagcaagtttcattcaacagcatcttcatgatggccgactcc
ggtgcgcgtggttctgccgcacagattcgtcagctggcaggtatgcgtggtctgatggct
aagccagacggctcgatcattgaaacgccaatcaccgcgaacttccgtgaaggtttgaac
gtacttcagtacttcatctcaacccacggtgcgcgtaaaggtttggcggataccgcattg
aaaactgcgaactccggttacctgacccgtcgtttagttgacgtggcacaggatctggtg
gtgactgaggatgattgtggtacccataacggtatcgtgatgaccccggttatcgaaggt
ggtgatgttaaagagccactgcgtgatcgcgtactgggtcgtgtgactgcagaagaagtt
atcaagccaggttcggctgatattctggttccgcgtaacaccctgctggacgaaaaatgg
tgtgatctgttagaagaaaactccgtcgacagcgttaaagttcgctccgtagtaagctgt
gaaactgatttcggtgtgtgtgctaactgctatggtcgcgacctggcacgtggccacatc
atcaacaaaggtgaagcggttggtgttattgcagcacagtccatcggtgagccgggtact
cagcttacgatgcgtacgttccacatcggtggtgcggcatctcgtgcggcagcagaatcc
agcatccaggttaagaacaaaggcagcttgaaactgagcaacgtcaagttcgtgaccaat
gcggctggcaagctggttattacgtctcgtaataccgagctgaagctgatcgacgaattc
ggtcgtaccaaagaaagctataaagtgccttacggtgcggtaatggctaaaggcgatggc
gcagaagttcagggcggcgaaaccgttgctaactgggatccgcacatcatgccagtggtc
accgaagtgagcggcttcattcgcttcgccgacatggttgatggccagaccattactcgc
cagaccgacgaactgactggtttgtcttctctggtcgttctggacagtgcagagcgtacg
ggtagcggtaaagacctgcgtccagcactgaaaatcgttgatgccaaaggcaatgacgta
ttgatcccaggtactgatatgcctgctcaatacttcctgccaggtaaagcgattgtacag
ctggaagacggtattcagatcggtgcgggtgataccttggcgcgtattcctcaggaatca
agcggtaccaaggatattaccggtggtctgccacgtgttgctgacttgttcgaagcacgt
cgtccgaaagagcctgcaatcctggctgaaatcagcgggatcatctcgttcggtaaagag
accaaaggcaagcgtcgtctggtgatctcaccgttggatggtagcgatgcatacgaagag
atgattccgaaatggcgtcagcttaacgtgttcgaaggtgaagttgtggaacgcggtgac
gtggtttccgatggcccagaatctccacatgacattctgcgtctgcgtggcgttcacgcg
gttacccgctacatcaccaacgaagtgcaggaagtttaccgtctgcaaggcgttaagatt
aacgataaacacattgaagttatcgttcgtcagatgctgcgtaaaggcactatcgttgat
gcaggtagcaccgacttcctggaaggcgagcaggcagaaatgtcccgcgttaaaatcgct
aaccgtaagctggcagcagaaggcaaaattgaggctacgttcactcgtgacctgctgggt
atcaccaaggcatccttggcgaccgagtccttcatctctgcggcttcgttccaggaaacc
acgcgcgttcttactgaagcggcagttgccggtaaacgtgatgaattgcgtggcctgaaa
gaaaacgtaatcgtgggccgtctgatcccagccggtaccggttatgcttatcatcaggac
cgtatgcgccgtaaagcacagggtgaagcgcctgttgttccacaagtcagcgcggatgaa
gcgactgcaaacttggccgaattgcttaatgccggttttggtaacaacaaaggctaa
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integrated database retrieval system
