KEGG   Yersinia pestis KIM10+ (biovar Mediaevalis): y0485
Entry
y0485             CDS       T00092                                 
Symbol
rpoC
Name
(GenBank) RNA polymerase, beta prime subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
ypk  Yersinia pestis KIM10+ (biovar Mediaevalis)
Pathway
ypk03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ypk00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    y0485 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ypk03021]
    y0485 (rpoC)
   03400 DNA repair and recombination proteins [BR:ypk03400]
    y0485 (rpoC)
Enzymes [BR:ypk01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     y0485 (rpoC)
Transcription machinery [BR:ypk03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     y0485 (rpoC)
DNA repair and recombination proteins [BR:ypk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      y0485 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: AAM84074
UniProt: Q8D1H3
LinkDB
Position
544195..548451
AA seq 1418 aa
MPIRSNSDRSQSVKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRT
FKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELA
SPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERRQILTEEQYLDA
LEEFGDEFDAKMGAEAIQALLKNMDLEAECEILREELNETNSETKRKKLTKRIKLLEAFV
QSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAP
DIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVD
YSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVV
WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAV
HVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLT
GPKEAERIYRAGLASLHARVKVRITEEIRNTEGESITRTSIIDTTVGRAILWMIVPQGLP
YSIVNQPLGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPE
AKAGIIEEAETEVAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMDNLSVEDVVN
RDGVVEQQVSFNSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLN
VLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGIVMTPVIEG
GDVKEPLRDRVLGRVTAEEVIKPGSADILVPRNTLLDEKWCDLLEENSVDSVKVRSVVSC
ETDFGVCANCYGRDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAES
SIQVKNKGSLKLSNVKFVTNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDG
AEVQGGETVANWDPHIMPVVTEVSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERT
GSGKDLRPALKIVDAKGNDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQES
SGTKDITGGLPRVADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEE
MIPKWRQLNVFEGEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKI
NDKHIEVIVRQMLRKGTIVDAGSTDFLEGEQAEMSRVKIANRKLAAEGKIEATFTRDLLG
ITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD
RMRRKAQGEAPVVPQVSADEATANLAELLNAGFGNNKG
NT seq 4257 nt   +upstreamnt  +downstreamnt
gtgcctatcaggtctaactccgacaggagccaatccgtgaaagacttattaaagtttctg
aaagcgcaaactaagaccgaagagtttgatgcgatcaaaattgctctggcatcgccagac
atgatccgttcatggtcattcggtgaagttaaaaagccggaaaccattaactaccgtacg
ttcaaaccagaacgtgacggccttttctgcgcccgtatctttggcccagtaaaagattac
gaatgcctgtgcggtaagtacaagcgtttaaaacaccgtggtgttatttgtgagaaatgc
ggcgttgaagtgactcaaactaaagtgcgccgtgagcgtatgggtcacatcgaactggct
tctccaactgcgcacatctggttcctgaaatcgctgccatctcgtatcggtttgctgctg
gatatgccattacgtgacatcgaacgtgtactgtacttcgaatcctatgtggttattgaa
ggcggtatgaccaacctggaacgtcgccagattctgactgaagagcagtatctggatgcg
ttggaagagtttggtgatgagttcgacgcgaaaatgggcgccgaggctattcaggccctg
ttgaaaaacatggatctggaagctgagtgcgagatcctgcgtgaagaattgaacgaaaca
aattctgaaaccaagcgtaagaaactgaccaagcgtatcaagttgctggaagcgttcgta
cagtctggcaacaagccagagtggatgatcctgaccgtgctgcctgtgttgccgccagat
ctgcgtccattggttccgttggatggtggtcgctttgcgacttccgatctgaacgatttg
tatcgtcgcgtgatcaaccgtaacaaccgtctgaaacgcctgctggacttggcggcaccg
gacatcatcgtacgtaacgaaaagcgtatgctgcaagaagcagtagatgcattgctggat
aacggccgtcgcggtcgtgcgattaccggctctaacaagcgtccgttgaagtcactggct
gacatgatcaaaggtaagcaaggtcgtttccgtcagaacttgctgggtaaacgtgttgac
tactcaggtcgttcggttatcaccgttggtccatacctgcgtctgcatcagtgcggtctg
cctaagaaaatggctcttgagctgtttaaaccgttcatctacggcaagctggaattgcgt
ggtcttgctaccaccatcaaagccgccaagaagatggttgagcgtgaagaagcggttgtt
tgggatatcctggatgaagttatccgcgaacacccagtgctgctgaaccgtgcaccaacc
cttcaccgtttgggtatccaggcgtttgaaccggttctgatcgaaggtaaggcaatccag
ttgcacccattggtttgtgcggcatataacgccgacttcgatggtgaccaaatggctgtc
cacgtaccgctgacactggaagctcagttagaagcgcgtgcgttaatgatgtctaccaac
aacatcctgtcacccgcgaacggcgagccaatcatcgttccttctcaggacgttgtattg
ggtctgtactacatgacccgcgactgtgttaacgccaaaggcgaaggcatggttctgact
ggcccgaaagaagctgagcgtatttatcgcgctggcttggcatctctgcatgcccgcgta
aaagtacgtattaccgaagaaattcgtaataccgaaggcgaaagcattacgcgtaccagc
attatcgatacgactgtaggccgtgctattttgtggatgatcgtcccgcaaggcctgcct
tactctatcgttaaccagccgctgggtaaaaaagctatctctaagatgctgaacacgtgt
taccgcatcttgggcttgaagccaacggttatctttgctgaccagatcatgtacaccggt
tttgcttacgcagcacgctcaggcgcctctgtaggtatcgatgacatggttatcccagaa
gcgaaagcggggatcatcgaagaagctgaaactgaagttgctgagatccaagaacagttc
caatctggtctggtcacggcaggcgaacgttataacaaagtgatcgatatctgggctgcg
gctaacgaacgtgttgctaaagcgatgatggataacttgtcggttgaggatgttgtcaac
cgtgatggcgttgttgaacagcaagtttcattcaacagcatcttcatgatggccgactcc
ggtgcgcgtggttctgccgcacagattcgtcagctggcaggtatgcgtggtctgatggct
aagccagacggctcgatcattgaaacgccaatcaccgcgaacttccgtgaaggtttgaac
gtacttcagtacttcatctcaacccacggtgcgcgtaaaggtttggcggataccgcattg
aaaactgcgaactccggttacctgacccgtcgtttagttgacgtggcacaggatctggtg
gtgactgaggatgattgtggtacccataacggtatcgtgatgaccccggttatcgaaggt
ggtgatgttaaagagccactgcgtgatcgcgtactgggtcgtgtgactgcagaagaagtt
atcaagccaggttcggctgatattctggttccgcgtaacaccctgctggacgaaaaatgg
tgtgatctgttagaagaaaactccgtcgacagcgttaaagttcgctccgtagtaagctgt
gaaactgatttcggtgtgtgtgctaactgctatggtcgcgacctggcacgtggccacatc
atcaacaaaggtgaagcggttggtgttattgcagcacagtccatcggtgagccgggtact
cagcttacgatgcgtacgttccacatcggtggtgcggcatctcgtgcggcagcagaatcc
agcatccaggttaagaacaaaggcagcttgaaactgagcaacgtcaagttcgtgaccaat
gcggctggcaagctggttattacgtctcgtaataccgagctgaagctgatcgacgaattc
ggtcgtaccaaagaaagctataaagtgccttacggtgcggtaatggctaaaggcgatggc
gcagaagttcagggcggcgaaaccgttgctaactgggatccgcacatcatgccagtggtc
accgaagtgagcggcttcattcgcttcgccgacatggttgatggccagaccattactcgc
cagaccgacgaactgactggtttgtcttctctggtcgttctggacagtgcagagcgtacg
ggtagcggtaaagacctgcgtccagcactgaaaatcgttgatgccaaaggcaatgacgta
ttgatcccaggtactgatatgcctgctcaatacttcctgccaggtaaagcgattgtacag
ctggaagacggtattcagatcggtgcgggtgataccttggcgcgtattcctcaggaatca
agcggtaccaaggatattaccggtggtctgccacgtgttgctgacttgttcgaagcacgt
cgtccgaaagagcctgcaatcctggctgaaatcagcgggatcatctcgttcggtaaagag
accaaaggcaagcgtcgtctggtgatctcaccgttggatggtagcgatgcatacgaagag
atgattccgaaatggcgtcagcttaacgtgttcgaaggtgaagttgtggaacgcggtgac
gtggtttccgatggcccagaatctccacatgacattctgcgtctgcgtggcgttcacgcg
gttacccgctacatcaccaacgaagtgcaggaagtttaccgtctgcaaggcgttaagatt
aacgataaacacattgaagttatcgttcgtcagatgctgcgtaaaggcactatcgttgat
gcaggtagcaccgacttcctggaaggcgagcaggcagaaatgtcccgcgttaaaatcgct
aaccgtaagctggcagcagaaggcaaaattgaggctacgttcactcgtgacctgctgggt
atcaccaaggcatccttggcgaccgagtccttcatctctgcggcttcgttccaggaaacc
acgcgcgttcttactgaagcggcagttgccggtaaacgtgatgaattgcgtggcctgaaa
gaaaacgtaatcgtgggccgtctgatcccagccggtaccggttatgcttatcatcaggac
cgtatgcgccgtaaagcacagggtgaagcgcctgttgttccacaagtcagcgcggatgaa
gcgactgcaaacttggccgaattgcttaatgccggttttggtaacaacaaaggctaa

DBGET integrated database retrieval system