Yersinia pestis KIM10+ (biovar Mediaevalis): y0501
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Entry
y0501 CDS
T00092
Symbol
purD
Name
(GenBank) phosphoribosylglycinamide synthetase
KO
K01945
phosphoribosylamine---glycine ligase [EC:
6.3.4.13
]
Organism
ypk
Yersinia pestis KIM10+ (biovar Mediaevalis)
Pathway
ypk00230
Purine metabolism
ypk01100
Metabolic pathways
ypk01110
Biosynthesis of secondary metabolites
Module
ypk_M00048
De novo purine biosynthesis, PRPP + glutamine => IMP
Brite
KEGG Orthology (KO) [BR:
ypk00001
]
09100 Metabolism
09104 Nucleotide metabolism
00230 Purine metabolism
y0501 (purD)
Enzymes [BR:
ypk01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.4 Other carbon-nitrogen ligases
6.3.4.13 phosphoribosylamine---glycine ligase
y0501 (purD)
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Motif
Pfam:
GARS_A
GARS_N
GARS_C
CPSase_L_D2
ATP-grasp_3
ATP-grasp
ATP-grasp_4
RimK
ATP-grasp_2
tRNA_synt_1c_R1
Dala_Dala_lig_C
ATP-grasp_5
LAL_C2
Motif
Other DBs
NCBI-ProteinID:
AAM84090
UniProt:
Q8ZAR2
Structure
PDB
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Position
complement(561662..562972)
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AA seq
436 aa
AA seq
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MPLHGVIQMNILIIGNGGREHALGWKAAQSPLADKIYVAPGNAGTALEPTLENVDIAATD
IAGLLAFAQSHDIGLTIVGPEAPLVIGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFL
ARHNIPSAEYQNFTDVEAALAYVRQKGAPIVIKADGLAAGKGVIVAMTQEEAETAVNDML
AGNAFGDAGHRIVVEEFLDGEEASFIVMVDGENVLPMATSQDHKRVGDGDTGPNTGGMGA
YSPAPVVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISADGQPKVIEFNCRFG
DPETQPIMLRMRSDLVELCLAGTQGKLNEKTSDWDERPSLGVVLAAGGYPADYRQGDVIH
GLPQQEVKDGKVFHAGTKLNGNHEVVTNGGRVLCVTALGETVAQAQQYAYQLAEGIQWEG
VFCRKDIGYRAIARGK
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
gtgccccttcacggagtcatccagatgaatattttgataattggtaacggcggtcgtgaa
cacgctctgggctggaaagccgcccaatctcctttagcggacaaaatttatgttgcacca
ggtaatgcgggtacagcactggaaccgaccttagaaaatgttgatatcgccgccactgat
attgccggtttactggcctttgctcaaagtcatgatatcggcctgacgattgttggccca
gaagcccctttggtgatcggcgtggttgatgcgttccgcgctgctggtttagctattttt
ggcccgactcaggctgcggctcaattagagggttctaaagccttcaccaaagatttcctg
gcccgtcacaacattccctctgcggaataccaaaactttacagatgtcgaggccgcattg
gcctatgtgcgtcaaaaaggtgcgccaatcgttatcaaagccgatggtctggccgccggt
aaaggcgtgattgttgcgatgacgcaggaagaagccgaaaccgccgtgaatgatatgttg
gccggtaacgcttttggtgatgcagggcaccgtatcgtggtggaagagttccttgatggc
gaagaagccagctttatcgtgatggttgatggcgaaaatgttttgccaatggcgaccagt
caggatcataagcgagttggcgatggtgataccgggccaaataccggcggaatgggtgct
tattccccagcccccgtggtaacagatgatgttcaccaacgggtcatggatcaggttatt
tggccgaccgtgcgtggtatggcggcggaaggtaatatttacaccggtttcctctatgct
ggcctgatgatttcagccgatgggcaacccaaagtcattgagttcaactgccgctttggc
gatccagaaacgcagccaatcatgttgcgtatgcgctccgatttggtcgaactgtgttta
gccggtacacaaggcaaactaaatgaaaaaacctcagactgggatgagcgcccatcactg
ggggtcgttttagccgctggcggttatccagcagattaccgccagggtgatgttattcat
ggcttaccacagcaagaagtcaaggatggaaaagtcttccacgcggggaccaagctgaat
gggaatcatgaagttgtcaccaatggtggccgcgtcttgtgtgtcactgcactcggtgaa
accgtcgcgcaggcgcaacaatatgcctatcagttagctgaggggatccagtgggaaggg
gttttctgccgtaaagatattggttatcgagcgattgctcgcggtaagtaa
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