Yersinia pestis KIM10+ (biovar Mediaevalis): y0580
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Entry
y0580 CDS
T00092
Symbol
uvrA
Name
(GenBank) excision nuclease subunit A
KO
K03701
excinuclease ABC subunit A
Organism
ypk
Yersinia pestis KIM10+ (biovar Mediaevalis)
Pathway
ypk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ypk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
y0580 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ypk03400
]
y0580 (uvrA)
DNA repair and recombination proteins [BR:
ypk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
y0580 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
y0580 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
AAA_29
AAA_22
nSTAND1
RsgA_GTPase
AAA_25
DnaJ_CXXCXGXG
nSTAND3
NACHT
T2SSE
AAA_23
Viral_helicase1
cobW
ScfRs
ExoX-like_C
Motif
Other DBs
NCBI-ProteinID:
AAM84168
UniProt:
Q8ZJ07
LinkDB
All DBs
Position
complement(657585..660428)
Genome browser
AA seq
947 aa
AA seq
DB search
MDNIEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC
PDHDVPLAAQTVSQMVDNVISQPEGRRLMLLAPVVKDRKGEHTKILENLAAQGYIRARID
GEVCDLSDPPKLELQKKHTIEVVVDRFKVREDLAQRLAESFETALALSGGTAVVADMDDP
HVEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQFFDPDRVLQNPEL
SLAGGAIRGWDRRNFYYFQMLRSLAEHYKFDIEAPFNSLDSAVQQAVLYGSGKDTIEFKY
INDRGDTTVRRHPFEGVLHNMERRYKETESSAVREELAKFISNRSCASCSGTRLRREARY
VFVENTTLPEISELSIGHALSFFQNMKLSGQRAQIAEKILKEIGDRLKFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLIHLRNLGNT
VIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGTVDDIMAAPASLTGQFLSGKRSIAI
PEKRVSADPSKVLKLIGATGNNLKDVTLTLPVGLFSCITGVSGSGKSTLINDTLYSIAQR
QLNGATITEPAPYREIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGVPE
SRTRGYTPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDHCKGKRYNRETLEVKY
KGKSIHEVLAMTIEEAREFFDAVPALARKLQTLIDVGLSYICLGQSATTLSGGEAQRVKL
SRELSKRGTGQTLYILDEPTTGLHFADIQQLLAVLHQLRDQGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGEILVSGTPETVAECAASHTARFLKPMLQRKPQTV
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atggataatattgaagttcggggcgctcgcacccacaatcttaagaatatcaacctgatt
atcccgcgcgacaaactgattgttgtcaccggcctatcaggttcaggcaaatcctcactg
gcttttgataccttgtatgccgaaggtcaacgccgttatgttgagtctctctccgcctat
gcacgccaatttctgtcgctgatggaaaaaccggatgttgaccatattgaaggcctgtct
ccggctatctctatcgagcaaaaatcaacctcccataacccacggtcaactgtcggtact
atcactgaaatccatgattacctgcgcttgctgttcgctcgagtcggcgagccgcgctgc
cctgatcatgatgtcccattagcggcgcaaacagtcagccaaatggttgataacgtgata
agccagccggaaggccgccgtctgatgctgttggcaccggtggtaaaagatcgcaaaggt
gaacacactaaaatactggaaaatctggccgctcaaggttacatccgggcgcggatcgat
ggcgaggtttgtgatctgtctgatccgcccaaattagagctgcaaaagaaacacaccatt
gaagtggtggttgaccgtttcaaggtacgcgaagatctggcgcaacgtttggcagaatca
tttgaaaccgcattggcgttatccggcggtaccgccgtggtagccgatatggacgatccg
catgtggaggagttattattttccgctaactttgcctgcccgatttgcggttacagcatg
agagagttggaaccacgcctgttctcctttaacaacccggcgggtgcctgcccaacgtgt
gatggcttgggtgtccagcagttttttgatccagaccgcgtgctgcaaaaccctgagctc
tctttagctggcggagcgattcgcggctgggatcgccgtaacttctattacttccagatg
ctacgttcactggccgagcattataaatttgatatcgaagcgccgtttaactcactggac
agcgccgtccagcaagccgtgctatacggttcaggcaaagataccatcgagttcaagtac
attaatgatcgcggtgatactaccgttcgccgccacccttttgagggggtgttgcacaat
atggaacgccgttataaagagacggaatccagtgcggtgcgcgaagagttagccaaattt
atcagcaaccgctcctgtgcgtcatgcagcggtacccgtctgcgcagagaggctcgttat
gtcttcgtggaaaacaccaccctgccagagatttctgaactgagcatcggccatgcactg
agtttcttccagaatatgaagctcagtggtcagcgtgcacaaatcgctgaaaagatactg
aaagaaattggcgataggctgaaattcctggttaacgtcgggctgaattatctgtcttta
tcccgatctgccgaaaccctgtccggtggcgaagcacagcgtatccgtctggctagccag
attggcgcgggtttggtcggcgttatgtatgtgctggatgagccgtctatcggtttacat
cagcgcgataacgaacgcttgctggagacattgattcacctacgtaatctgggtaacacc
gtgattgtggtggaacatgatgaagatgccatccgggccgcagatcatgtgattgatatc
ggccctggggccggcgtgcacggaggtgaagttgtcgccgaaggaacggtagatgacatc
atggccgcaccggcgtcactcacgggccagttcctcagcggtaagcggagcatcgccatc
ccagagaaacgggtcagtgctgatccgagcaaagtcttaaagctgataggggctacgggc
aataacctgaaagatgtcactctgacgctgcctgtcgggctattcagttgcatcaccggg
gtctccggctcggggaaatcgacgctgatcaacgatactttatacagtattgcccaacgc
caactgaacggcgcgaccatcaccgaacccgcaccataccgcgagatccaagggctagaa
catttcgataaagtcatcgacattgatcaaagcccgattggccgtacgccgcgttctaac
ccagccacctataccggcatctttacccccattcgcgagttatttgccggagtgccggaa
tcacgcacccgcggttatacgccaggccgtttcagttttaacgtcaaaggtgggcgctgt
gaagcctgccagggcgatggggtaataaaagtagaaatgcactttctgcctgatatttat
gttccttgcgatcactgtaaaggtaagcgttataaccgtgaaacgctggaagtaaaatat
aaaggtaaaagtattcacgaagttctggcgatgactattgaagaggcccgcgagttcttt
gatgccgtacctgctctggcacgtaagctgcaaaccctgatagatgttggcctgtcctat
atttgtctgggccaatcagccacaacgttatctggtggggaagcacagcgagtgaaacta
tcgcgcgaactgtcaaaacgcgggaccggccagacattgtatattctggatgagcctact
accggcctgcattttgccgatattcagcaactgctagcggtattgcatcagttacgggat
cagggcaataccattgtagtgattgaacacaatctggacgtaattaagacggcggattgg
attgtcgatctggggccagaaggcggcagtggtggcggtgaaattttggtctccggcaca
ccagagacggtggcggaatgcgcggcatcacacacggcacggttccttaagccaatgttg
cagcgtaagccacaaaccgtttaa
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integrated database retrieval system
