Yersinia pestis KIM10+ (biovar Mediaevalis): y0678
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Entry
y0678 CDS
T00092
Symbol
dacB
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase, fraction B
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
ypk
Yersinia pestis KIM10+ (biovar Mediaevalis)
Pathway
ypk00550
Peptidoglycan biosynthesis
ypk01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ypk00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
y0678 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ypk01002
]
y0678 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ypk01011
]
y0678 (dacB)
Enzymes [BR:
ypk01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
y0678 (dacB)
Peptidases and inhibitors [BR:
ypk01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
y0678 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
ypk01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
y0678 (dacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
Beta-lactamase2
Transpeptidase
Motif
Other DBs
NCBI-ProteinID:
AAM84266
UniProt:
A0AAX2HY11
LinkDB
All DBs
Position
complement(761193..762641)
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AA seq
482 aa
AA seq
DB search
MHFSRIVSGLACSIILNISVSNANAAQVENYTQYLPDGANLALMVQKIGASTPAIDYHAQ
QMALPASTQKVLTALAALLQLGPDFRFNTTLESHGTITDGVLRGNLIARFGGDPTLTRQQ
LRNMVATLRKAGVKQIAGDVVIDTSVFASHDKAPGWPWNDMTQCFSAPPAAAIVDRNCFS
VSLYSAPNPGDTAFIRVASYYPVQMFSEVRTLAKGSPDAQYCELDVVPGELNRFTLTGCL
TQRSEPLPLAFAVQNGASYAGAILKDELKKADIQIDGNLRRQTIPSPAGNVLAQTQSAPL
HDLLKIMLKKSDNMIADTVFRTIGHQRFGVPGTWRSGADAVRQILRQKAGVDLGNSIVVD
GSGLSRHNLISPATMMQVLQYIAQNDQELNFISMLPLAGYDGTLRYRGGLHEAGVNGKVS
AKTGALQGVYNLAGFITTASGQRMAFVQFLSGYAVPPEDQKNRRAPLVRFESRLYKDIYQ
NN
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgcatttttcacgaattgtcagtggattggcctgttctatcatactcaatatcagtgta
tctaatgccaatgcggctcaggtcgagaattacactcagtatctgcctgatggggcaaat
cttgcgttaatggtccaaaaaattggggcatcaacccctgcaatagactatcacgctcag
cagatggcgctaccggccagtacgcaaaaagtactgacggccttggcagcgttattgcaa
ctcggcccagactttcgcttcaatactaccttggaaagccatggcacgattactgatggt
gtgttgcgaggtaatttaattgcccggtttggtggtgacccaacgttaacgcgtcaacaa
ctgcgtaatatggttgcgactctcagaaaagcgggggttaaacagatcgcgggggatgtg
gtgattgatacctcagtattcgccagtcatgacaaagcaccgggttggccatggaacgat
atgacgcaatgctttagtgcgccgcctgctgctgccattgttgatcgcaactgtttttca
gtctctctttacagtgcgcccaatcccggcgataccgcatttatccgtgtcgcgtcttat
tatccggtgcaaatgttcagtgaagtccgcacgttagccaaaggctcacccgatgcacaa
tattgtgagttggacgtcgtgccaggcgaattaaaccggtttacgcttaccggttgtctg
acacagcgcagcgaacctttgccattggcctttgctgtgcaaaatggggccagctacgcc
ggggctatcttaaaagatgaattgaaaaaagctgatattcaaattgatggcaatctgcgc
cgccaaacaataccgagtcctgcgggaaacgtgctagcacagacccaatcagccccctta
catgatttgctgaaaatcatgctgaaaaaatcagacaatatgatcgctgacaccgtcttc
agaaccattggtcatcagcgttttggggttccgggtacttggcgctcgggtgccgatgcc
gttcgccaaattttacgccaaaaagcaggcgttgatcttggtaacagcattgtggtggat
ggatctggcctatcgcgccataatcttatttcaccagcaacaatgatgcaggttttgcaa
tatattgctcaaaatgatcaagagcttaattttatatcaatgctgcctctagcaggatat
gacggtactctacgttatcgtggtggcctgcatgaagcgggggtcaacggtaaagtttca
gcgaagacgggtgcactgcaaggggtttacaatcttgccggtttcattactaccgctagt
gggcaacgtatggcatttgtacaatttttatccggctatgccgttccacctgaagaccaa
aaaaatcgccgagcccccttggttcgatttgagagccgcctctataaagatatttatcag
aataactga
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