Yersinia pestis KIM10+ (biovar Mediaevalis): y0696
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Entry
y0696 CDS
T00092
Symbol
deaD
Name
(GenBank) inducible ATP-independent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ypk
Yersinia pestis KIM10+ (biovar Mediaevalis)
Pathway
ypk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ypk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
y0696 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ypk03019
]
y0696 (deaD)
03009 Ribosome biogenesis [BR:
ypk03009
]
y0696 (deaD)
Enzymes [BR:
ypk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
y0696 (deaD)
Messenger RNA biogenesis [BR:
ypk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
y0696 (deaD)
Ribosome biogenesis [BR:
ypk03009
]
Prokaryotic type
rRNA helicases
y0696 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
DeaD_C
ResIII
CMS1
AAA_30
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AAM84284
UniProt:
Q8D1D0
LinkDB
All DBs
Position
781467..783476
Genome browser
AA seq
669 aa
AA seq
DB search
MRHVYMTTELETSFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGS
GKTAAFGLPLLHNIKADLKSPQVLVLAPTRELAVQVAEALSSFSKHINGVNVVALYGGQR
YDVQLRALRQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIM
AQIPAEHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWRVGGGYRKN
EALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKD
GRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE
RRLLQNIERTMKLTIPEVELPNADLLSERRLAKFAAKVSQQLESSDLDMYRALLAKLQPE
EEFDIETLAAALLKMAQGERPLILPPEAPRRPQREFNSRDDRGNDRGSRDRGDSRRDNRS
DSRSADSRDGGERPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGN
IKLFASHSTIELPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHERRERPAGGNGGERR
GGGRPFSGERREGAGAPPRRSFSGDRAPTGGGERRGNRDGQRSAAPRRDDAAAPAAAAAA
PARRRFGDA
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgaggcacgtgtacatgactactgagcttgaaacctcttttgctgatctggggctgtcc
gctccaattctttccgctctgactgatcttggttatgaaaaaccatctcctatccagttg
gaatgtattccacacctgttaaacggccgtgatgttctcggtatggcgcaaacaggcagt
ggcaaaacagccgcgtttggtctgccgctgttacacaatattaaagctgatctgaagtcg
ccacaggttctggtgttggcaccaacccgtgaattggctgttcaggttgctgaagcgctg
tccagtttctctaaacacattaatggcgtcaacgtggtggccctgtacggcggtcagcgt
tatgacgttcaattacgcgctttgcgccaggggccacaagttgttgttggtaccccaggt
cgtctgttagaccacctgaaacgcggtacccttaacctgtccaacctgagcggtttagtg
ttggatgaagcagatgaaatgctgcgcatgggctttatcgaagacgttgaaacgattatg
gcgcagatcccggctgaacatcagaccgcgttgttctctgcaaccatgccagaagcgatt
cgtcgtattacgcgtcgcttcatgaaagaaccacaggaagtccgcattcaatctagcgtg
acgacccgccctgacattagccagagctactggagagtgggtggcggttaccgtaaaaat
gaagcgctggtacgtttcctggaagctgaagatttcgatgctgctattattttcgtacgt
accaaaaatgcgaccttggaagtagcagaagcccttgagcgtagcggctacaacagcgcg
gcactgaatggtgatatgaatcaggcactgcgtgagcagacgctggagcgtttgaaagat
ggccgtctggatattctgattgcaactgacgtagctgcccgtggcttggacgttgagcgt
atcagcttggtcgtaaactatgatatccctatggattcagagtcttatgttcaccgtatc
ggtcgtactggccgtgcaggtcgtgcaggtcgcgcgttgctgttcgttgagaaccgtgaa
cgtcgtctgttgcagaacatcgaacgcacgatgaagctgacgatcccagaagttgagttg
ccaaacgcagatttgctgagcgaacgtcgtttagctaaattcgccgctaaggttagccaa
caactggaaagcagtgatttggatatgtaccgcgcattgctggctaagctgcaaccggaa
gaagagtttgatatcgagactctggctgctgcactgctgaaaatggcgcagggcgaacgt
cctctgatcctgccaccagaagccccacgccgtccgcagcgtgaattcaattcacgtgat
gaccgtggtaacgatcgtggtagccgtgatcgtggtgacagccgtcgcgataaccgctct
gacagccgttctgctgatagccgtgatggtggtgagcgtcctgctcgtcgtgaacgtcgt
gatgttggcgagatggagctgtaccgcattgaagtgggccgtgatgatggtgttgaagtt
cgccatattgttggcgctatcgctaacgaaggtgatatcagcagccgttatatcggtaat
atcaagttgtttgcttcccactcaacgattgaactgccaaaaggcatgccgggcgaaatg
ttatctcacttcacccgtacccgtatcctgaacaagccgctgaacatgcagctgttgggt
gatgcacagccacatgaacgccgtgagcgtccagcgggtggtaacggtggtgagcgtcgt
ggcggtggccgtccattcagtggcgaacgtcgtgaaggcgcaggcgctcctcctcgtcgt
tcatttagcggcgatcgtgctcctaccggtggtggtgagcgtcgtggtaaccgcgatggt
cagcgttctgcggccccacgtcgtgatgatgctgccgcacctgctgctgcagccgccgca
ccagcccgtcgtcgcttcggtgatgcataa
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