Yersinia pestis KIM10+ (biovar Mediaevalis): y0976
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Entry
y0976 CDS
T00092
Symbol
sbcC
Name
(GenBank) ATP-dependent dsDNA exonuclease
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ypk
Yersinia pestis KIM10+ (biovar Mediaevalis)
Brite
KEGG Orthology (KO) [BR:
ypk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ypk03400
]
y0976 (sbcC)
DNA repair and recombination proteins [BR:
ypk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
y0976 (sbcC)
Archaeal homologous recombinant proteins
y0976 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
nSTAND_NTPase5
SMC_N
cobW
nSTAND3
ABC_tran
AAA_21
NTPase_1
AAA_14
Motif
Other DBs
NCBI-ProteinID:
AAM84557
UniProt:
A0A0H2W225
LinkDB
All DBs
Position
complement(1102023..1105712)
Genome browser
AA seq
1229 aa
AA seq
DB search
MKILSLRLKNINSLQGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHQTPR
LIVTPSQNELMTRHTAESLAEVEFDVKGIRYRAFWSQRRARNSPDGNLQAPKVELALCEN
GKILADKVRDKLDMIAAITGLDFGRFTKSMMLSQGQFAAFLNADANDRAELLEELTGTDI
YGRLSERVFEKHKQAKIDLDALHQRASGIELLNEEQRLALAQQIDALSQQEQQLSKEQLV
TQNQINWLTGWQQQQQHVQQYQQQQVLVEQEYQQALPGLQRLARSEPAEKLRPLQRERDR
SQKDLQQTQQRITALAQQQQQYLAQLTPLTQAVEQATAARQQQQLNQHEQETLIEQRIVP
LDNLITQQQQTLSQLAGQIQQLRAKEQQNSQQLALNEQKLLQTHQRLQQLADYANLHAHH
QHWEKHLPLWHEQFRQLQLQQQQSAQSEQQLHQQTTLLATLQQQATTLSAQEKQQQVALA
EARAQASYLQQKLLVLEQQQPSAQLRQQLNEFNEQRQICQQLAALSPLAQQIQALYDKQQ
QQFTAQQQQLKQLEQQLTEKRQLYQQQKQHLVDLEALLEREKQIVTLEAERAKLQPGDAC
PLCGAVEHPAITAYQAVKPSETAVRVAKLRLQVEQLYTEGTELRTQVASMQQHQQRIEQE
LQDHRQQLAAYQQRWQTLAQPLSLAFTLNEPDALALWLEQHEQQEQACQLKLVEYERLTQ
QYQQAKDILTQLEQRQQEHQQQLALITERQKNAQQTYQQLQSQYQHQQEALIAQQQVLNH
TLTELSLSVPDADQQQDWLAQREEECQRWQQHQQEQQRLTIEQKTLETRIENERRHLQEC
IDQLSALSQQRQQAETLLQQQIQQRQALFGEDIVAEVRQRLRLQQQQAELAQQNAEKALQ
QAQSQLNRLSGELTGLEQQCQQYQQRATTTQAELQQALSTSEFADETALTAALLSEEERQ
HLQQLQQQLNERRQQAQIRLQQAREILDQHLQLCPQGVDKSSELTLLQQQSEQLLAQLKT
TTLRQGELRNQLESDTTRRHNQRTLFEQIERSQQQYDDWSYLNQLIGSKEGDKFRKFAQG
LTLDHLVYLANNQLSRLHGRYLLQRKTTDALELQVVDTWQADAIRDTRTLSGGESFLVSL
ALALALSDLVSHKTSIDSLFLDEGFGTLDAETLDTALDALDSLNASGKTIGVISHVEAMK
DRIPVQIKVKKVNGLGVSRLDNAFRVNQD
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattttgagcctacgtctgaaaaacattaactcattacagggcgaatggaagata
gatttcactgccgaaccttttgccagtaacggcttatttgctatcaccggcccaactggc
gcgggaaaaaccacgctgttagatgctatctgtctggcgttgtaccaccaaacccctcgc
ctcatcgtaacccccagccagaatgaactgatgacgcgccatactgcagaatcactggca
gaagttgaatttgacgtgaaaggtatccgttatcgcgccttttggagccagcgccgtgcc
agaaacagcccagatggcaatctgcaagcccccaaagtagaactggccttatgcgaaaac
ggcaaaatcttggccgataaggtccgcgataaattagatatgatcgcggcaatcaccggt
ctggactttggccgttttaccaagtccatgatgctgtcacaggggcaatttgccgccttc
ctcaatgcagatgccaatgatcgcgctgagttactggaagaattgacgggaaccgacatc
tacggacgtctatctgaacgcgtatttgaaaaacataaacaagccaagatcgatctggat
gcattgcaccaacgtgccagcggcattgaactgttaaatgaagaacaacgcctggccctg
gcacagcaaattgatgcactgagtcaacaagagcagcagctcagtaaagaacaactcgtc
acgcaaaaccaaataaactggctaacaggttggcagcagcagcaacaacacgtacagcaa
tatcagcagcaacaggtgctcgttgagcaagagtatcaacaggcactacccggcctacaa
cgtttagcgcgtagcgaaccggcagaaaaattgcgcccgttgcaacgagaacgtgaccgt
agccaaaaagatttacaacaaacacagcaacgcatcaccgcattggcacaacaacagcag
caatatctggcacagctcacaccactgactcaggcagtagagcaagccactgcggcacgc
caacagcaacagcttaatcaacatgagcaagaaacactcatcgaacaacggatcgtgccg
ctggataaccttatcacccagcagcagcagacattgtcacaacttgcagggcaaatacag
caattacgcgctaaagagcagcaaaacagccaacaacttgcgctgaatgagcaaaaacta
ttgcagacccatcaacgcctgcaacagctagcagactatgccaatttacatgcccatcat
cagcactgggaaaaacatcttcccttatggcatgagcagttccgccaattacaactacag
caacaacaatcagctcaaagtgagcaacaactacaccaacaaacaaccttactcgccacg
ctgcaacagcaggctacaacactaagtgcgcaagagaaacaacaacaagtggccttagcg
gaggctcgcgcacaggcaagctatcttcagcagaaattattagtccttgaacaacagcaa
ccttcagcacagttgcgccagcaactaaacgagttcaatgagcaacgtcagatatgccaa
caactggcggctttatcgcctttagcacaacaaatacaagcactctatgataagcagcag
caacaatttacggctcagcagcaacagcttaaacagttagagcaacagttaaccgaaaaa
cgccagttatatcagcagcagaaacaacatctggttgatttagaagccttactggaacgc
gaaaaacagattgtcacactggaagcagaaagagccaaactgcaaccaggagatgcctgc
ccgctatgtggtgctgtggagcacccggcgattactgcgtaccaagcagtgaaaccctca
gaaacagccgtgcgagttgcaaaactgcgcctacaggtcgaacagctttacactgaaggc
actgagttgcgtacccaagttgcaagcatgcaacaacatcagcagcgtatagagcaagag
ttacaagaccatcgccaacagttagctgcatatcagcaacgttggcaaacactggcacaa
ccgttatcactggccttcaccttgaatgaacctgacgcattagccctgtggctagagcaa
catgagcagcaagaacaggcgtgtcaactaaagctggtggagtatgagcgtctgactcag
cagtatcagcaggccaaagatatcctgacccagttggaacaacggcagcaagaacatcaa
caacagttggcactgatcactgaacgccaaaaaaatgctcaacaaacctaccaacagctg
caatcgcaatatcagcaccagcaagaagcacttatagctcagcagcaagtgttaaaccat
acgctgactgaattgtccttatcagtacccgatgccgatcaacaacaggattggctagca
cagcgggaagaggaatgtcagcgctggcaacaacatcagcaagagcaacagcggctcact
attgaacaaaaaacgctggaaacacgtattgagaatgaacggcgtcatttacaggagtgt
attgaccaattatcggcgctaagtcaacaacgccagcaagctgaaacgctattacagcag
caaatccagcagcgccaggcactgtttggtgaagatatcgttgccgaagtccgccagcga
ttacgcttacagcagcaacaggcagagcttgcccagcaaaacgcagaaaaagccctacaa
caggctcaatcccaactgaataggctatcaggtgaactgaccgggctggagcaacaatgc
caacagtatcagcaacgtgctaccaccacacaggctgaattgcaacaagcactgtccacc
agcgaatttgctgatgaaacggcattaaccgcagccctgttaagtgaagaagaaaggcag
catctacaacaattgcaacagcaattaaatgagcgacggcaacaagctcagatccgcctg
caacaagccagggagatattggatcaacatttacagctttgtccccaaggtgtcgataag
tcctctgaattaaccttattacaacaacagtcagaacagctattggcacaactgaaaacc
acaacgttacggcaaggcgaactacgcaatcagttagaaagcgacaccactcgacgtcat
aatcaacgtacgctatttgaacaaattgagcgtagtcagcagcaatatgatgactggagt
tacctcaatcaattaattggctccaaagaaggcgataaattccgtaaatttgcgcaaggt
ctcacactcgatcatctggtttatctggccaataaccaacttagtcgtttacatgggcgc
tatctattacaacgtaagactacagatgcattggaattacaggtggtagatacctggcaa
gcggatgccatacgcgatactcgtaccctgtcaggaggagagagttttctggtgagtctg
gcgctagcattagcactgtctgatttagtcagccataaaaccagtattgactcactgttt
cttgatgaaggcttcggtacgttggatgctgaaacattggataccgcactggatgccttg
gatagcctgaatgcttccggcaaaactattggggtgataagccatgtagaggcaatgaaa
gatcggatcccggtgcagataaaagtgaaaaaagttaacgggttaggcgtcagccgtttg
gataatgccttccgagtcaatcaagactga
DBGET
integrated database retrieval system
