Yersinia pestis KIM10+ (biovar Mediaevalis): y1784
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Entry
y1784 CDS
T00092
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ypk
Yersinia pestis KIM10+ (biovar Mediaevalis)
Pathway
ypk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ypk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
y1784 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ypk03400
]
y1784 (mfd)
Enzymes [BR:
ypk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
y1784 (mfd)
DNA repair and recombination proteins [BR:
ypk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
y1784 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
HTH_53
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AAM85352
UniProt:
A0AAX2I0E0
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All DBs
Position
complement(1962082..1965528)
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AA seq
1148 aa
AA seq
DB search
MSQQYRYSLPERRGDTRQLGQLTGSACAVECAEIIERHDGPVMLITPDMQTALRLRDEIQ
QFSPQPVSTLSDWETLPYDSFSPHQDIISARLSCLYHLPAMKRGVIILPINTLMQRVCPH
EFLHGHALVMKKGQHLSRDKLRAQLEQAGYRSVEQVMEHGEFATRGALLDLYPMGSNEPY
RIDFFDDDIDSLRVFDVDSQRTLVEVEQINLLPAHEFPIDKAAIELFRSQWREQFEVRRD
NEHIYQQVSKGIWPAGIEYWQPLFFSQQLPTLFSYLPENTLLVNTGDLESSAERFWQDVN
QRFESRRVDPMRPLLAPESLWLRVDALFNELKEWPRVQLKTEAQPAKAANTNLCYQPLPD
LSVQAQQKAPLDNLRRFIESFHGSVVFSVESEGRRETLQDLLARIKLSPTLITTLSQAAN
PGHYLMVGASERGFLDTDKQLALICESDLLGERVSRRRQDNRRTINTDTLIRNLAELRPG
QPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYSGGADDNA
PLHRLGSDVWSRARQKAAEKVRDVAAELLDIYAQRAVKSGFKFKHDREQYQLFCQSFPFE
TTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVTNNKQVAVLVPTTL
LAQQHFDNFRDRFATWPVRIEMLSRFRSAKEQQVILEQAAEGKIDILIGTHKLLQSDLHW
HDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVIREAILREILRGGQVYYLYNDVENIEKVTQKLAELVPEARITI
GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHLGLAQLHQLR
GRVGRSHHQAYAYLLTPNPKAMSTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMTTIGFSLYMELLESAVDALKEGREPSLEDLTSNQTEIEMRMPVLLPEDFISDV
NIRLSFYKRIASARNETELDELKVELIDRFGKLPDPARYLLHTAELRQQAQKLGIKRIEG
NERGGFIEFGENNKVDPVYLIGLLQRQPQIYRLEGPTKLKLVQDLSDRAQRLKFITELLA
AFAQHRIA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaacaatatcgttattcattgcctgaacgacgtggtgatacccgtcagttaggc
cagttgaccggatcagcctgtgcggtcgaatgtgccgaaatcattgaacgccatgatggc
ccggtaatgctgattacccccgatatgcaaacggccttgcgcttgcgtgatgagatccag
caattctcgccacaacccgtaagtaccctctccgattgggaaacgctgccttacgatagc
ttctcgccacatcaggatattatttcggcccgcctctcttgtttgtatcatcttccggca
atgaaacgcggtgtcattattctcccaattaataccctgatgcaacgagtgtgcccacac
gaatttctacatggccacgctttggtgatgaaaaaaggccagcacttgtcacgggataag
ttacgcgcccaacttgagcaagcgggctatcgcagtgttgaacaggtcatggagcacggt
gagtttgcgacgcgaggtgcgttgctggacttatacccaatggggagcaatgaaccgtat
cggattgatttttttgatgatgacattgatagcctgcgggtatttgacgttgattcgcaa
cgcacactcgtcgaagttgagcaaataaacttactgccagcacatgagttcccaatagat
aaagcggcgattgaattattccgtagccaatggcgtgaacagtttgaagtccgtcgcgac
aacgaacatatttatcagcaagtgagtaaaggcatctggcctgcgggtatcgagtattgg
cagccgctgtttttcagccagcaattaccgacattgtttagctatctgcctgaaaatacc
ttattggtaaacaccggagatctggaaagctcggctgaacgcttctggcaggacgttaac
caacgcttcgaaagccgccgtgttgacccaatgcgcccactgttggcccccgagagcttg
tggcttcgggttgatgcgctgtttaatgaattaaaagagtggccgcgtgttcagcttaaa
acagaggcgcagcccgccaaagccgcgaataccaatttatgttatcaaccgctgcccgat
ttatccgttcaggcacaacaaaaagcgcctcttgataatctgcgtcgctttattgaatcg
tttcatggcagtgtggtgttctcggttgaaagtgaaggccgccgtgaaaccttacaagac
ctgctggcacggataaaactcagcccaacactgatcactacgctgtctcaggcggctaac
cccggccattatctgatggttggggcctcggaacgtggcttcctcgatactgacaaacaa
ctggcgctgatttgtgaaagcgacctactcggtgagcgtgtcagccgtcgccggcaagat
aaccggcggaccatcaacaccgatacgttgatccgtaatttggcagaactccgccccggc
cagccggtagtccatctggaacacggtgtcggccgctatctgggactaaccacccttgaa
gcgggtgggataaaggctgaatacctgatattgacttacgccggtgaagataaactgtat
gtccccgtgtcatcattgcatctcattagccgctattcagggggtgcggacgataacgcc
ccgttgcataggttaggcagcgatgtctggagccgggcacggcaaaaagccgccgagaaa
gtgcgggatgttgctgctgaactgctggatatctatgcccagagggcggttaaatctggc
tttaaatttaagcatgaccgtgagcaataccagctgttctgccaaagcttcccgtttgaa
accacgccagatcaagagcaggcgatcaacgcggtgctcagtgatatgtgccaaccgtta
gccatggaccgcttggtttgtggtgatgtgggctttggtaaaacggaagtggcgatgcgg
gccgcatttctggccgttaccaataataaacaagtggcggtgttggtacccaccaccctg
ctggctcaacagcattttgataatttccgtgaccgctttgccacttggccggtacggatt
gagatgctatcccgttttcgcagtgccaaagagcagcaagtcattctggaacaagccgct
gaaggcaaaatcgatatccttatcggtacccataaattgctgcaaagcgatctgcattgg
cacgatctcggcctgctgattgtggatgaagaacaccgcttcggcgtgcgtcataaagag
cggatcaaagcgatgcgggctgatgttgatatcctgaccctgacggccacgccaatccca
cggacactgaatatggcgatgagtggcatgcgtgacttatcgattatcgccacccctccg
gcacggcgtctggcggtaaaaacctttgtccgcgaatacgatagcctggtgatccgtgaa
gccatattgcgtgaaatcctgcgcggtgggcaagtctattacctgtacaacgatgtggag
aatatcgaaaaagtcacgcagaaactggctgaattagtccctgaggctcggataaccatc
ggccatggtcaaatgcgtgaacgggatttggaacgggtgatgaatgatttccaccatcaa
cgcttcaatgtgctggtctgtaccaccattattgaaaccggtattgatattcccagcgcc
aataccattattattgagcgagcggatcacttgggtctagcgcagttgcaccagctcaga
ggccgggtcgggcgctctcaccatcaggcttatgcctacttgctgacccccaatccaaaa
gccatgagcaccgatgcgaagaaacggctggaagccattgcgtcactggaagatctcggt
gcaggttttgcattggcgacacatgatttggaaatccgtggtgccggggagctattgggc
gaggaccaaagcggccagatgaccacgattggcttctcgttgtatatggagctactggaa
agtgccgtagatgcgctaaaagagggccgtgagccttcattagaagacctgaccagcaac
caaaccgaaatagaaatgcgcatgccggtgctgctgccagaggatttcatttcagatgtg
aatatcaggctgtcgttctataaacgtatcgccagtgcgcgcaacgaaaccgagctggat
gagttaaaagttgagctaatcgatcgctttggcaagttacccgaccccgcccgctattta
ttgcataccgccgaattgcgtcaacaagcccagaaactgggtatcaaacgtattgaaggc
aatgagcgtggcggtttcattgagtttggcgagaacaataaagtggatccggtgtatttg
attgggctgttacaacggcaaccacagatttaccgtttggaagggccaaccaaattgaag
ttggtgcaagatttaagtgatcgggcgcaacggttgaaatttattacggagttactggcg
gcatttgcacaacatcgcattgcctag
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integrated database retrieval system
