Yersinia pestis KIM10+ (biovar Mediaevalis): y2610
Help
Entry
y2610 CDS
T00092
Symbol
sbcB
Name
(GenBank) exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
ypk
Yersinia pestis KIM10+ (biovar Mediaevalis)
Pathway
ypk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ypk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
y2610 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ypk03400
]
y2610 (sbcB)
Enzymes [BR:
ypk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
y2610 (sbcB)
DNA repair and recombination proteins [BR:
ypk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
y2610 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
y2610 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
y2610 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
YkoP
Motif
Other DBs
NCBI-ProteinID:
AAM86164
UniProt:
Q8D081
LinkDB
All DBs
Position
2874193..2875686
Genome browser
AA seq
497 aa
AA seq
DB search
MPSASRSHPNMTTINEGLNRIMSDKNKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDF
NLVEEPLVIYCKPADDYLPQPEAVMITGITPQHALANGVNEAEFSRQIHQAFSVPGTCIL
GYNNIRFDDEVSRNIFYRNFYDPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDG
LPSFKLEHLTKANGVEHLQAHDAMSDVYATIAMAKLVKQAQPRLFDYLYQHRSKHKINAL
IDIAEMTPLVHVSGMFGAARGNTSWVAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLR
ERLYTRRDKLQAQESAIPIKLVHINKCPVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQ
NPQVREKVVALFAQAEPFAVTDDVDTQLYNGFFSDADRATIKIIQQTESQNLPALDLTFQ
DPRLEALLFRFRARNYPNTLNDSEQQRWLQHRREALSPERVQDYVLQLEQFYNQYEDDKE
KLALLKALFEYAKGLVS
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
ttgccttctgcaagcagatcccacccgaatatgaccacgataaatgaagggttaaaccga
ataatgtcagataaaaataagcaaccaacattttacgtccacgattatgaaaccttcggc
cagcggccagccttggatagacctgcgcaatttgccggggtacgtaccgatctggatttc
aatctcgtcgaagagccattggtcatttactgcaagcccgcagatgattatctgccacag
cccgaagcggtgatgataaccggtattaccccccaacatgctttagccaacggggtcaat
gaagctgagttttcccgccaaatacaccaggccttttcggtacccggcacctgtatcctc
ggctacaacaatattcgttttgatgatgaagtcagtcgcaacattttctatcgtaatttt
tatgatccttatgcctacagttggcaggggggaaattcccgttgggatctgttggatgtg
atgcgcgcctgctatgccctgcgcccagaaggtattgtttggcccgaaaatgatgatggc
ctgcccagctttaaactggaacatttgaccaaagccaatggcgtcgaacatttacaggca
catgatgcgatgtccgatgtctacgccaccattgcaatggcaaaattggtgaaacaggcc
caaccccgtctgtttgattatctgtatcagcaccgcagtaagcataagatcaatgcgttg
attgatatcgcggagatgacaccactggttcatgtgtctggcatgtttggtgccgcacgg
ggcaacaccagttgggtggcaccgctggcctggcaccccgagaataaaaatgcggtaatt
atgtgtgatctggccggggatatgtccccattactggagttggacagcgatacattgcgc
gaacgtctgtatacccgccgtgacaagctccaagcccaagagtcggcaatccctatcaaa
ctggtacatatcaataaatgtccggtattggctcccgcgaaaaccctgctgcccgagaat
gctgatcgcttggggattgatcgccagcgttgtttgcaaaatctacaactgctgcggcaa
aacccacaggtgcgtgaaaaagtggtcgcgctgtttgcacaagctgagccattcgcggtt
accgatgatgtggatacacagttgtataacggctttttcagtgatgctgatcgcgccacc
ataaagattatccagcaaactgagtcacaaaatctgccagcactggatttgacatttcag
gacccacggttggaggccctgttattccgcttccgcgcccgtaactacccgaataccttg
aatgacagtgaacaacagcgttggttacagcatcgccgtgaagcgcttagccctgaacgg
gtacaagattatgttttgcaactggaacaattttataaccagtatgaagacgataaagag
aaacttgcgctgctaaaagcgttgtttgaatatgccaagggattagtgagttaa
DBGET
integrated database retrieval system
