Yersinia pestis KIM10+ (biovar Mediaevalis): y3537
Help
Entry
y3537 CDS
T00092
Symbol
rpoD
Name
(GenBank) RNA polymerase, sigma(70) factor
KO
K03086
RNA polymerase primary sigma factor
Organism
ypk
Yersinia pestis KIM10+ (biovar Mediaevalis)
Pathway
ypk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ypk00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
y3537 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ypk03021
]
y3537 (rpoD)
Transcription machinery [BR:
ypk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
y3537 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
Sas-6-like_oligomerization
HTH_SUN2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AAM87085
UniProt:
Q8CZR5
LinkDB
All DBs
Position
3921388..3923286
Genome browser
AA seq
632 aa
AA seq
DB search
MLAVSPTDTNPNTLKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQ
IEDIIQMINDMGIQVLEEAPDADDLMLAENTTDTDDDAAEAAAQVLSSVESEIGRTTDPV
RMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGESRL
SDLITGFVDPNAEEDIAPTATHVGSELSTEEMDDEDEDEDEDDDAEDDNSIDPELARQKF
SDLREQYENARMEIKKNGRNHANAAAEILKLSEVFKQFRLVPKQFDYLVNNMRAMMDRVR
TQERIIMKLCVEQCKMPKKNFVTLFSSNETSDTWFNAAVAMGKPWSEKLKDVSEDVQRSL
QKLRQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQF
LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN
KLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGD
FIEDTTLELPLDSATSESLRSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFD
VTRERIRQIEAKALRKLRHPSRSEVLRSFLDD
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
ttgttggcggtttcgccgaccgacaccaacccaaatactctgaagtgtggataccgtctt
atggagcaaaacccgcagtcacagctgaagctacttgtcacccgaggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgattccgatcag
atcgaagacatcatccagatgattaatgacatgggcatacaggtactagaagaagcacct
gatgctgatgatttgatgctggccgaaaacaccacggataccgatgatgatgcggctgaa
gctgctgcacaggtgctttccagtgttgaatcagaaatcgggcgaaccaccgacccggtg
cgtatgtatatgcgcgaaatgggtaccgttgagctgttgacacgcgaaggcgagattgat
attgccaaacgtatcgaagacggtatcaatcaggttcagtgttctgttgctgaataccct
gaagcgatcacttatctgttggaacaatatgatcgtgttgaagcgggcgaatctcgttta
tctgacctgatcactggctttgttgatccaaacgccgaagaagatattgccccaacagcg
acccacgttggttctgaattatccactgaagagatggatgacgaagatgaagacgaggat
gaagacgacgacgcagaagacgataacagcatcgatccagagttggcgcgccagaaattc
agcgatttgcgtgagcagtatgaaaacgcgcgtatggaaatcaagaaaaatggccgcaat
cacgcgaatgctgccgctgaaattctgaagctttctgaggtgttcaagcagttccgtcta
gtgccgaagcagttcgattatctggtcaataacatgcgtgccatgatggatcgcgttcgt
actcaagaacgtatcatcatgaagctgtgtgttgagcagtgcaaaatgccgaagaaaaat
ttcgttacgttgttttccagcaatgaaaccagcgacacctggtttaatgcggcagtggcg
atgggtaaaccttggtctgaaaaactgaaagatgtctcggaagatgttcaacgcagcttg
cagaaactgcgccagatcgaagaagaaaccggtctgaccatcgagcaagtaaaagacatc
aaccgccgtatgtctatcggtgaagcgaaagcgcgtcgtgccaagaaagaaatggttgag
gctaacctgcgtttggttatctctattgccaaaaaatacaccaaccgtggtttgcagttc
cttgatttgatccaggaaggcaacattggtctgatgaaagcagtagataagttcgaatac
cgtcgcggttataagttctcaacttacgcaacctggtggattcgtcaggctattactcgt
tcgattgcagaccaggcgcgcactatccgtattccagtgcatatgattgagaccattaac
aaactcaaccgtatctcacgccagatgttgcaagagatgggccgtgagccaacgccagaa
gagttggcggaacggatgttgatgccggaagataagatccgtaaagtgctgaagatagct
aaagagcctatctccatggaaaccccgattggtgatgacgaagattcacatctgggcgat
ttcattgaagataccactctggagctaccgctggactctgcaacttctgagagcctgcgc
tctgccacgcacgatgtgttagctggcctaacagcccgtgaagcgaaagttctgcgtatg
cgtttcggtatcgatatgaacactgaccacacgttggaagaagtgggcaaacagttcgac
gtcacccgtgaacgtattcgtcagatcgaggcgaaggcattacgtaaactgcgtcaccca
agccgttctgaagtgctgcgtagcttcctcgacgattaa
DBGET
integrated database retrieval system
