Yersinia pestis El Dorado: CH46_275
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Entry
CH46_275 CDS
T03719
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ypl
Yersinia pestis El Dorado
Pathway
ypl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ypl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CH46_275 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ypl03021
]
CH46_275 (rpoD)
Transcription machinery [BR:
ypl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CH46_275 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
Sas-6-like_oligomerization
HTH_SUN2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AJJ13635
UniProt:
A0A380PME5
A0AAX2HZ51
LinkDB
All DBs
Position
306486..308324
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AA seq
612 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVLEEAP
DADDLMLAENTTDTDDDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGESRLSDLITGFVDPNAEEDIAPTA
THVGSELSTEEMDDEDEDEDEDDDAEDDNSIDPELARQKFSDLREQYENARMEIKKNGRN
HANAAAEILKLSEVFKQFRLVPKQFDYLVNNMRAMMDRVRTQERIIMKLCVEQCKMPKKN
FVTLFSSNETSDTWFNAAVAMGKPWSEKLKDVSEDVQRSLQKLRQIEEETGLTIEQVKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE
ELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLR
SATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEVLRSFLDD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagctacttgtcacccgaggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgattccgatcag
atcgaagacatcatccagatgattaatgacatgggcatacaggtactagaagaagcacct
gatgctgatgatttgatgctggccgaaaacaccacggataccgatgatgatgcggctgaa
gctgctgcacaggtgctttccagtgttgaatcagaaatcgggcgaaccaccgacccggtg
cgtatgtatatgcgcgaaatgggtaccgttgagctgttgacacgcgaaggcgagattgat
attgccaaacgtatcgaagacggtatcaatcaggttcagtgttctgttgctgaataccct
gaagcgatcacttatctgttggaacaatatgatcgtgttgaagcgggcgaatctcgttta
tctgacctgatcactggctttgttgatccaaacgccgaagaagatattgccccaacagcg
acccacgttggttctgaattatccactgaagagatggatgacgaagatgaagacgaggat
gaagacgacgacgcagaagacgataacagcatcgatccagagttggcgcgccagaaattc
agcgatttgcgtgagcagtatgaaaacgcgcgtatggaaatcaagaaaaatggccgcaat
cacgcgaatgctgccgctgaaattctgaagctttctgaggtgttcaagcagttccgtcta
gtgccgaagcagttcgattatctggtcaataacatgcgtgccatgatggatcgcgttcgt
actcaagaacgtatcatcatgaagctgtgtgttgagcagtgcaaaatgccgaagaaaaat
ttcgttacgttgttttccagcaatgaaaccagcgacacctggtttaatgcggcagtggcg
atgggtaaaccttggtctgaaaaactgaaagatgtctcggaagatgttcaacgcagcttg
cagaaactgcgccagatcgaagaagaaaccggtctgaccatcgagcaagtaaaagacatc
aaccgccgtatgtctatcggtgaagcgaaagcgcgtcgtgccaagaaagaaatggttgag
gctaacctgcgtttggttatctctattgccaaaaaatacaccaaccgtggtttgcagttc
cttgatttgatccaggaaggcaacattggtctgatgaaagcagtagataagttcgaatac
cgtcgcggttataagttctcaacttacgcaacctggtggattcgtcaggctattactcgt
tcgattgcagaccaggcgcgcactatccgtattccagtgcatatgattgagaccattaac
aaactcaaccgtatctcacgccaaatgttgcaagagatgggccgtgagccaacgccagaa
gagttggcggaacggatgttgatgccggaagataagatccgtaaagtgctgaagatagct
aaagagcctatctccatggaaaccccgattggtgatgacgaagattcacatctgggtgat
ttcattgaagataccactctggagctaccgctggactctgcaacttctgagagcctgcgc
tctgccacgcacgatgtgttagctggcctaacagcccgtgaagcgaaagttctgcgtatg
cgtttcggtatcgatatgaacactgaccacacgttggaagaagtgggcaaacagttcgac
gtcacccgtgaacgtattcgtcagatcgaggcgaaggcattacgtaaactgcgtcaccca
agccgttctgaagtgctgcgtagcttcctcgacgattaa
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