Yersinia pseudotuberculosis IP 32953 (serotype 1): BZ17_1899
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Entry
BZ17_1899 CDS
T03832
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein rapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
ypo
Yersinia pseudotuberculosis IP 32953 (serotype 1)
Brite
KEGG Orthology (KO) [BR:
ypo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ypo03021
]
BZ17_1899 (rapA)
Transcription machinery [BR:
ypo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
BZ17_1899 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_34
Cas3-like_C_2
AAA_22
COG2_N
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AJJ54949
UniProt:
Q66EN4
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All DBs
Position
2110148..2113054
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AA seq
968 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAIDVRMITLLFPATGENRLYARNDSPITRVMFNPSDT
ITHHEGWQLKVEEVTQENGLITYIGTRLDTEETGVAMREVLLDSKLTFSKPQDRLFAGQI
DRMDRFALRFRARKYQSEQFRLPWSGLRGIRASLIPHQLHIAYEVGQRHAPRVLLADEVG
LGKTIEAGMIIHQQLLAGRAERVLIVVPESLQHQWLVEMLRRFNLRFSLFDDSRYSEALL
DSSNPFDTEQMVICSLDFVRRNKQRLEQLADASWDLLVVDEAHHLAWSEEAPSREYQVIE
QLAEHIPGVLLLTATPEQLGQQSHFARLRLLDPDRFHDYEEFVNEQQKYRPIADAVTLLL
GGERLTDDKLNLLGELIDEQDIEPLLKAANSQSEDSEAARQELVTMLMDRHGTSRVLFRN
TRNGVKGFPHRVLHQIKLPLPTQYQTAIKVSGIMGAKKTLDARAKDMLYPEQIYQEFEGE
NATWWNFDPRVEWLLNYLVANRGEKVLVICAQAATALQLEQVLREREAIRAAVFHEGLSL
IERDRAAAYFASEEDGAQVLLCSEIGSEGRNFQFACQLVMFDLPFNPDLLEQRIGRLDRI
GQNREIQIMVPYLEDTAQAILVRWYHEGLDAFEHTCPTGRTIYDSSYQELISYLATPSEQ
EGLDEFIHTCRQQHEGLKLQLEQGRDRLLEMHSNGGEHGQELAQSIAEQDNDINLVSFAL
NLFDIVGINQEDRSDNLIVLTPSDHMLVPDFPGLPPDGCTVTFDREQALSREDAQFVSWE
HPIIRNGLDLILSGDTGSCAVSLLKNKALPVGTLLAELVYVVEAQAPKHLQLTRFLPPTP
VRMLMDRNGTNLAAQVEFESFNRQLNAVNRHTSSKLVNAVQQEVHTMLQQAEALVEAQAQ
ALIETAKREADDKLSTELARLEALKAVNPNIRDDEIEALEHNRKMVLENLNQAGWRLDAI
RLVVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggatcagcgacacagaaagcgaacttggattgggt
actgtcgttgccattgacgtgcgcatgatcaccttactgttccctgcaaccggtgaaaac
cgcctttacgccagaaatgactcgccaatcacccgggtcatgttcaatccgagcgatacc
atcactcaccacgaaggctggcagctgaaagtggaagaagtgactcaagaaaatgggctg
attacctatatcggtacccgtttggatactgaggaaaccggcgtcgccatgcgtgaagtt
ttgctcgatagcaaactgacttttagtaaaccacaggatcgcttattcgccggtcaaatc
gatcgcatggatcgctttgccctgcgttttcgcgcccgtaaataccaaagcgagcagttc
cggttgccgtggagcggcctgcgcggtatccgtgccagcctgatcccacaccagttacat
atcgcttatgaagtgggtcagcgccacgcgccacgggtcttactggccgatgaagtgggg
ttgggtaaaaccatcgaagccgggatgattatccaccagcaactgctggctggccgtgct
gaacgggtgctgatcgtggtaccggagagcctgcaacaccagtggctagtagagatgtta
cgccgcttcaacctgcgcttctcactgtttgatgacagccgttattccgaagccttgttg
gacagtagcaatccgtttgataccgaacagatggtgatttgttcgctggattttgttcgt
cggaataagcagcggttagaacaactggccgatgcttcctgggatctgctggtggtggat
gaagcgcaccatctggcctggagcgaagaggctccaagccgcgaatatcaagtgattgaa
cagttggcagagcatatccccggcgtgttgttattgacagcaacaccagagcaattgggc
caacaaagtcactttgcccgcctgcgtttgctggatccagatcgcttccatgattacgaa
gagttcgtcaatgaacaacagaaataccggcctatcgccgatgccgtcaccctgctgtta
gggggcgagcgtttaaccgatgataagctgaatctgttaggtgaactgattgatgaacaa
gatattgagccactactgaaagcggccaatagccaaagtgaagacagcgaagcggcgcgt
caagaattagttaccatgctgatggataggcacggtactagccgggtgctgttccgtaat
acccgtaatggggtaaaaggcttcccgcaccgcgtcttacaccaaattaagctgccattg
ccaacacagtaccaaactgcaattaaggtctctggcatcatgggggcgaagaaaaccctc
gacgctcgtgcaaaagatatgctttatcccgagcaaatctatcaggagtttgaaggcgaa
aacgccacctggtggaactttgacccacgggttgaatggctactgaactatttggttgcc
aaccggggtgagaaggtgttggtgatctgcgcacaagccgctacagctttgcagcttgaa
caagtgttacgtgagcgtgaagctattcgggccgccgtcttccatgaaggtttatcgctg
attgaacgtgaccgtgccgccgcctattttgcctcagaagaagatggtgctcaggtctta
ctgtgttccgaaattggttcagaggggcgtaacttccaatttgcctgccaactggtcatg
ttcgatttgccgttcaaccccgatctcctggagcaacgtattggccgtttggatcgtatc
ggccagaaccgtgaaatccagattatggtgccttatttggaagacaccgcgcaggcaata
ctggttcgttggtaccacgaagggttggatgcgttcgaacacacctgcccaacaggccgt
accatttatgacagcagctatcaggaactgattagctatttggccacgccaagtgagcag
gaagggttggatgagtttatccacacctgccgtcagcagcacgaagggttaaaacttcag
ttggaacagggccgtgaccgcttactggagatgcactctaacggtggcgaacatgggcag
gagctggcacagagcattgccgaacaagataatgacatcaatttagtcagttttgcactc
aacctgttcgatattgtcgggatcaaccaggaagatcgtagcgataacctgatcgtgctg
accccgtccgatcacatgctggtgcccgatttccccggtttgccaccagatggctgcacc
gtcacctttgatcgtgaacaggcactctcgcgggaagatgcccagtttgtcagttgggaa
caccccatcatccgcaatgggttggatttgatcctgtctggcgataccggcagttgcgcg
gtgtctttattgaaaaataaagccttacccgtcggtaccctgctggctgagttagtttac
gtggtcgaggcacaagcaccgaaacacttgcaactgacccgtttcttgccaccaacaccc
gtgcgtatgctcatggatcgcaacggcactaacctggcggcacaggttgaatttgaaagt
ttcaatcgccaactgaatgcggtaaaccgccatacctccagcaagctggtcaatgcggtt
cagcaagaagttcacaccatgttgcaacaagccgaagcactggtagaagcgcaagcgcag
gctctgattgaaacggcaaaacgcgaggccgatgataagttgagtactgaactggcgcgt
ctggaagcgttgaaagcggttaacccgaatattcgtgatgacgaaatagaggcgcttgag
cataaccgtaagatggtgctggaaaacctgaatcaagcaggctggcgtttagatgctatc
cggctggtggtggtaacacatcagtag
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