Yersinia pestis Pestoides F (biovar Antiqua): YPDSF_0626
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Entry
YPDSF_0626 CDS
T00505
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ypp
Yersinia pestis Pestoides F (biovar Antiqua)
Pathway
ypp03410
Base excision repair
ypp03430
Mismatch repair
ypp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ypp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
YPDSF_0626
03430 Mismatch repair
YPDSF_0626
03440 Homologous recombination
YPDSF_0626
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ypp03400
]
YPDSF_0626
DNA repair and recombination proteins [BR:
ypp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
YPDSF_0626
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
YPDSF_0626
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
YPDSF_0626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ABP39035
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Position
704967..706700
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AA seq
577 aa
AA seq
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MTLKTQLRRREAADDSHLPAQLPPLLRRLYASRGVKDAQELERGVKGLLAWQKLDGIDAG
VTLLQQALADRRRIVIVGDFDADGATSTALAVLALRSMGGSNLDYLVPNRFEDGYGLSPE
VVEQVAARGAELIVTVDNGISSHAGVDLAHAKGIQVLVTDHHLPGETLPAADAIINPNLA
GCDFLSKSLAGVGVTFYLMLALRARLRECGWFEQRTLAVPNLAELLDLVALGTVADVVPL
DANNRILVHQGLSRIRAGKCRPGIRALLEVANRDARQLVANDLGFSLGPRLNAAGRLDDM
SIGVALLLSDDIAQARALAIDLDTLNQTRREIEQGMQVEALQLCDQLERTSSELPYGIAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGEGLLKGSGRSVAGLHMRDALERLDTLNP
GLILKFGGHAMAAGLSLEEGKFDEFRQRFADLVGEWMDASQLEGVIWSDGELNGAELSLE
TAELLRDGGPWGQSFPEPTFDGKFRILQQRLVGERHLKLMVEPLNGGPLLDGIAFNVDTT
LWPDSSVREVKLAYKLDINEYRGNRSVQLLVQHLWPY
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgacgttgaaaacccaacttcgccgccgtgaggcggcagatgacagccatttacctgcg
caattgcccccgttactgcgtcgtctctatgctagccgtggcgtaaaggatgcgcaggag
ttggagaggggcgtgaaaggcctactggcatggcaaaaactggatggtattgacgctggc
gtcaccttattacaacaagccctggctgatcggcggcgtattgtcattgtcggcgatttt
gatgctgacggcgcgaccagtaccgcgttggcggtgctggctttgcgcagtatgggcggc
agtaaccttgattatctggtacctaaccgatttgaagatggttatgggcttagccccgaa
gtggttgaacaagttgcggccagaggggcagagctgattgttactgtggataacggtatt
tcctctcatgccggggtcgatctggctcatgccaaaggtattcaggttctggtgacggac
caccatttgccgggcgaaacattacccgcggcggatgccatcattaacccaaatctggcc
ggttgcgattttttatccaagtcattggcgggggtcggtgtcactttctatttgatgctg
gcgctgcgcgcccgtctcagggaatgtggttggtttgaacaacgtaccttagcggtccct
aatctggctgaactgttggatttggtggcattgggtacggtggcagatgtggtgccgttg
gatgccaataaccgtattttggtccatcaagggttaagtcgtattcgtgcggggaagtgc
cgtccaggaattcgcgcattattggaggtcgctaaccgtgatgcgcgtcaactggttgcg
aacgatttaggcttttctcttggcccacggttgaatgcggcggggcgtttagatgatatg
tccatcggggtggcgctactgctgagtgacgatattgctcaggcgcgagcactggcaatc
gatcttgacaccttgaatcaaacccggcgcgagatagaacagggtatgcaggttgaagct
ttgcaactgtgtgaccagttggagcgcaccagcagtgaattaccttacggtatcgcgatg
taccatccagaatggcatcagggcgttgtgggtattttggcttcacgcatcaaagaacgc
tttcaccgcccggttatcgcttttgccccggcgggagaagggttattgaaagggtcgggt
cgtagcgttgcgggtttgcatatgcgtgatgcccttgagcgtctggacactctgaaccca
gggttaatactgaagtttggtgggcacgccatggcggcagggttatcgctggaggaaggt
aaattcgatgaattccgccagcgttttgcagatttagtcggtgaatggatggatgcttcg
caattggaaggcgttatttggtctgatggcgaactgaacggtgctgagttatcactggag
accgcagagctattgcgcgacggtggtccatgggggcaatctttccctgagccgaccttt
gatggcaaattccgtatcttacagcagcgcttagtgggtgagcgtcacctgaaactcatg
gtagagccgctgaatggcgggcctttgttagatggaattgcctttaatgtcgataccact
ttgtggccggatagcagcgtgcgagaagttaaattggcctataaactggatattaatgaa
tatcgtggtaatcgcagtgttcagttgctggttcaacacttgtggccttattag
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