Yersinia pestis Pestoides F (biovar Antiqua): YPDSF_1046
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Entry
YPDSF_1046 CDS
T00505
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ypp
Yersinia pestis Pestoides F (biovar Antiqua)
Brite
KEGG Orthology (KO) [BR:
ypp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ypp03016
]
YPDSF_1046
Enzymes [BR:
ypp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
YPDSF_1046
Transfer RNA biogenesis [BR:
ypp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
YPDSF_1046
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
ABP39446
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All DBs
Position
complement(1176754..1177914)
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AA seq
386 aa
AA seq
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MKDNGYNDQENDVLNYQLITTNNALQQVCEQARTHAHIALDTEFVRTRTYYPQLGLIQLY
DGEQLSLIDPLPITEWQPFRALLQDLNVVKYLHAGSEDLEVFLNAFDQMPTPMIDTQVLA
AFSGRSLSCGFAMLVAEFEGVELDKSESRTDWIARPLSEKQCDYAAADVFYLLPLAAKLV
EATEAAGRMDAAKDECLLLCRRRSETLDPELAYREITNAWQLRGHQLACLQKLAEWRLRQ
ARERDLAVNFVVREEHLWQVARYQPTSLGELDSLGLSGQEIRYHGRTLLALVAEGNAVPE
DQLPPPIANLIDQPGYKKVFKDIKALIQSVSERSGLSSELLASRRQINQLLNWHWKLKLS
DAQPELLTGWRGDLLSSELLEILQHY
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagataacggatataacgaccaagagaatgacgttttgaattatcagttgatcacg
accaataacgcattgcaacaggtctgcgaacaagcccggacacatgctcacatcgcgttg
gatacagagtttgtcagaacgcgcacttactaccctcagttgggtttgattcaactgtat
gatggtgaacaactctcacttatagatccattacctatcacggaatggcagccttttcgc
gcgttactgcaagatctgaatgtggtgaaatatttacacgcaggcagtgaagatctcgaa
gtgtttttaaacgcttttgaccagatgccaaccccgatgattgatactcaggtattagcg
gcattttctggccgtagcctatcctgcggctttgccatgctggtggctgagtttgaaggt
gttgagttagataaaagtgaatcacgtacagactggattgcccggccgttgagtgaaaaa
cagtgcgattatgcggcggctgatgtgttttatcttttacctctggcggctaaattagtc
gaagccactgaggcggcagggcggatggacgcggcgaaagacgaatgtctattgctgtgc
cgccgtcggagtgagacgctcgatcctgaactggcttaccgtgagattaccaatgcctgg
caactccgtggccatcaactggcatgtttgcagaaattagccgaatggcgtttacgtcag
gcacgggagcgggatttggcggttaactttgtggttagggaagagcacctgtggcaagtt
gcccgctatcaaccaacatcactcggtgagttagattctcttggcttgagtgggcaggag
atccgctatcacgggcgaacattgctggcactggtcgccgaagggaatgccgtccctgaa
gatcagcttcctcccccgattgctaacttgattgaccaaccggggtacaaaaaagtcttt
aaagatattaaagccttgattcaatcggtcagtgaacgtagcggattaagcagtgaatta
ctggcatcacgtcgccaaattaatcagttactcaattggcactggaagttgaagctttca
gatgctcaacctgaattattaacaggctggcgtggcgatttattgtcttctgaattgctt
gaaatcttacaacactattaa
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