Yersinia pestis Pestoides F (biovar Antiqua): YPDSF_1563
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Entry
YPDSF_1563 CDS
T00505
Name
(GenBank) ATP-dependent RNA helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
ypp
Yersinia pestis Pestoides F (biovar Antiqua)
Brite
KEGG Orthology (KO) [BR:
ypp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ypp03009
]
YPDSF_1563
Enzymes [BR:
ypp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
YPDSF_1563
Ribosome biogenesis [BR:
ypp03009
]
Prokaryotic type
rRNA helicases
YPDSF_1563
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABP39950
LinkDB
All DBs
Position
1760273..1761598
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AA seq
441 aa
AA seq
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MTVTNFSELDLDERLIDALRDKGYERPTAIQASAIPPAMDGRDVLGSAPTGTGKTAAFLL
PALQHLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKYTQLDIATITGGVAYMNHA
EVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRW
RKQTLLFSATLEGEAIREFAERILNEPVELEADPSRRERKKIQQWYYRADDIKHKTALLC
HLLKQPDVSKSIIFVRTRERVHELVSWLREAGINAWFLEGEMVQAKRTEAVIRLGDGRVN
VLVATDIASRGLDIDDISHVFNFDMPRTADVYLHRIGRTGRAGRKGVAISLVEAHDHILL
GKIGRYLNEPLKPRVIDELRPTSKAPSEKATGKPSKKVLAKRKEQKESSKEKVKVKVRHR
DAKNVGKRRTPKAKPDTKSAG
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaaccaatttttccgaactcgatctcgatgaacgtctgattgacgcactgcgc
gacaaaggctatgagcgtcctacggctatccaggcttcggcgatcccgccggctatggat
gggcgtgacgtattaggttcggctccaacaggtaccggcaaaactgccgcctttttgctg
ccagccttgcagcatttgctggatttcccccgcaaaaaatccgggccaccgcggatcctg
atcctgacgccaacccgtgagttagccatgcaagtggcagaccaagcccgtgaactggca
aagtatactcagttggatatcgccacaataaccggcggcgtggcatatatgaaccatgcc
gaagtcttcagtgagaatcaggatgttgtcgttgccacgacaggccgcctgctgcaatac
atcaaagaagaaaactttgattgtcgtgcggtagagaccctgatcctggatgaagctgac
cgtatgctggacatgggttttgcccaagatattgaaaccatctcagccgaaacccgctgg
cgtaagcaaacactgctgttctctgccactcttgaaggtgaagccatccgcgaatttgcg
gagcgcattctcaatgagccagtagaacttgaggccgatccatcgcgccgcgaacgcaaa
aaaattcagcaatggtactaccgggctgacgacatcaagcataagacagcgttactttgt
catctgctgaaacagcccgatgtctcgaagtccatcatttttgttcgtacccgcgagcgt
gtccatgagttagtcagttggctacgtgaggcgggcattaatgcctggttccttgaaggc
gaaatggtacaagctaaacgtaccgaagcggtcattcgcttgggtgatggccgggtaaat
gtgctggttgccaccgatattgcctcacgcgggttggatattgatgatatcagccatgta
ttcaactttgatatgccacgcaccgccgatgtttatttacatcgtattggccgtactggc
cgtgctggccgcaaaggcgtcgccatttccttggttgaagctcatgatcatatcttgtta
ggcaaaattggccgttatcttaacgaaccactgaaaccacgcgttattgatgagttgcgc
ccaacgagcaaggcaccaagtgaaaaagcgacgggtaaaccctctaaaaaggttttagcg
aagcgtaaagaacaaaaagaatccagcaaagagaaagtaaaggttaaggttcgtcatcgt
gatgccaaaaacgttggtaagcggcgtacaccaaaagcaaaacctgataccaagagtgct
ggttag
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