Yersinia pestis Pestoides F (biovar Antiqua): YPDSF_3391
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Entry
YPDSF_3391 CDS
T00505
Name
(GenBank) porphobilinogen synthase
KO
K01698
porphobilinogen synthase [EC:
4.2.1.24
]
Organism
ypp
Yersinia pestis Pestoides F (biovar Antiqua)
Pathway
ypp00860
Porphyrin metabolism
ypp01100
Metabolic pathways
ypp01110
Biosynthesis of secondary metabolites
ypp01120
Microbial metabolism in diverse environments
ypp01240
Biosynthesis of cofactors
Module
ypp_M00121
Heme biosynthesis, plants and bacteria, glutamate => heme
ypp_M00846
Siroheme biosynthesis, glutamyl-tRNA => siroheme
Brite
KEGG Orthology (KO) [BR:
ypp00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00860 Porphyrin metabolism
YPDSF_3391
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ypp04147
]
YPDSF_3391
Enzymes [BR:
ypp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.24 porphobilinogen synthase
YPDSF_3391
Exosome [BR:
ypp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
YPDSF_3391
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ALAD
Motif
Other DBs
NCBI-ProteinID:
ABP41744
LinkDB
All DBs
Position
complement(3893405..3894427)
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AA seq
340 aa
AA seq
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MSYAFPGTFPGRRMRRVRCHDFSRRLVAENHLTVNDLIYPVFVMEGTHQQQAVSSMPGVS
RMTIDLLLKEAEAIAKLGVPVISLFPVIEAGKKSLYAEEAYNPDGLVQRTVRALKDAVPE
LGILTDVALDPYTTHGQDGVIDSDGYVINDVTKEILVRQALSHAEAGAEIIAPSDMMDGR
IGAIRDQLERQGLVNTQIMAYSAKYASCYYGPFRDAIGSSSNLKGGDKKTYQMDPANSDE
ALQEIAQDLQEGADMVMVKPGMPYLDVVRRVKDTFGVPTFAYQVSGEYAMHMAAIQNGWL
QEKPTVMESLLCFKRAGADGVLTYFAKQVAQWLHDDQMQR
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgagctatgcatttccgggcacctttcctggtcgccgtatgcgccgtgtacgctgtcat
gatttcagccgccgtttggttgccgagaatcacttgacggtcaatgacttgatttacccg
gtgtttgtcatggaagggactcaccagcaacaagccgtttcttcaatgccgggggtctct
cgtatgacaattgatctgctgctgaaagaagcagaagcaattgctaagctcggtgtgccg
gttatatcgctattcccggtcattgaagcagggaaaaaatcattatatgcagaagaggca
tataacccggatggtttagttcagcgtactgtgcgtgcgttgaaagatgcagttcctgag
ctaggtattctgactgacgtggcactcgatccctatacgacccatggtcaagatggtgtg
attgattctgatggttacgtgatcaatgatgtcaccaaagagattctagtgcgtcaggca
ctatcgcatgctgaagctggcgctgagattattgcaccaagcgatatgatggatggccgt
ataggtgcaattcgtgatcaattagagcgccaagggttagtgaacacccagataatggct
tattcggctaagtatgcgtcttgctactatggcccattccgcgatgcaattggctcgagc
agtaatctaaaagggggggataaaaaaacttatcagatggatcccgccaacagtgatgaa
gcactgcaagaaatagctcaagatttacaagaaggcgctgatatggtgatggtaaaacca
ggaatgccatatctggatgttgtacgcagggtgaaagatacttttggtgttccaaccttt
gcctatcaggtgtctggtgaatatgccatgcatatggcagcgattcagaatggctggctc
caagagaaaccgacggtgatggagtcgttgttatgctttaagcgtgcaggtgcggatggc
gtattaacttatttcgcaaagcaagttgcgcaatggctacatgatgaccagatgcagcgc
taa
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