Yersinia pestis Pestoides F (biovar Antiqua): YPDSF_3450
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Entry
YPDSF_3450 CDS
T00505
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ypp
Yersinia pestis Pestoides F (biovar Antiqua)
Pathway
ypp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ypp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YPDSF_3450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ypp03019
]
YPDSF_3450
03400 DNA repair and recombination proteins [BR:
ypp03400
]
YPDSF_3450
Enzymes [BR:
ypp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
YPDSF_3450
Messenger RNA biogenesis [BR:
ypp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YPDSF_3450
DNA repair and recombination proteins [BR:
ypp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
YPDSF_3450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Peptidase_S66
zf-CXXC
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
ABP41803
LinkDB
All DBs
Position
complement(3956625..3958457)
Genome browser
AA seq
610 aa
AA seq
DB search
MSTAAVINRELLAVQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIP
ALVTDGLTLVVSPLISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQIKLLY
IAPERLVMESFLDQLYQWRPALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIAL
TATADEATRGDIVRLLNLDQPLIQISSFDRPNIRYTLVEKFKPLDQLWRFVQDQRGKSGI
IYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAVLLYDPADMAWLRRCLEEKPAGAQ
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGKQQPCGNCDICLDPPKRYDGLADAQKAL
SCVYRVGQRFGLGYIVEVLRGANNQRIREMGHDKLSVYGIGREQTHEHWVSVLRQLIHLG
LLSQNIAQFSALQLTEAARPVLRAELPLQLAVPRIQSLKVRSSANQKSYGGNYDRKLFAK
LRKLRKSIADEGNIPPYVVFNDATLLEMAEQMPITASELLSVNGVGQRKLERFGAPFMAL
IRDHVDNNDD
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgaccgcagcagtgataaacagggaattactggcagtgcaggtattgcgagatact
tttggttatcagcaatttcggccagggcagcaggagatcatcaacgcgacattgtcaggc
caggattgtctggttgtgatgccaactggcggcggtaagtccttgtgttatcagatccct
gccttggtgaccgatgggctgacattggtggtttcaccgcttatctctctgatgaaagat
caggttgaccaactgttggcctatggcgtgggcgcgggttgtctaaactcatcgcagacc
cgtgaacagcaactggccgttatggatggttgccgcagtgggcagattaaattgctgtat
atcgcgccagaacggttggtgatggagagttttcttgatcaactgtatcaatggcgaccc
gccttgctggcagtggatgaggctcactgtatttcccaatgggggcatgatttccgcccg
gaataccgtgctcttggtcagttaaagcagcgtttccctgatctaccggttattgcattg
accgctacggctgatgaagcgacgcgtggcgatattgtgcgcctgttgaatctggatcaa
cctctgattcagatcagtagttttgatcgcccgaatatccgctataccttagttgagaag
tttaaacctctcgatcaactgtggcgttttgtacaagaccagcgcggcaagagcggcatt
atttactgtaatagccgagcgaaagtggaagatacgaccgcccgtttgcaaagccgtggc
ttgagtgttgccgcctatcacgccgggctggataacgagcgccgtgctcaggtgcaagag
gctttccagcgcgatgacttacaagtggtggtcgccaccgtagcgtttggaatggggatt
aacaaaccgaacgtccgctttgtcgtgcattttgatatcccacgcaccatcgaatcctac
tatcaggaaacggggcgcgccgggcgtgatggcttaccggctgaggccgtgttgttgtac
gatccggcagatatggcgtggttacgccgttgtcttgaagagaaacctgcgggtgctcag
caagatatcgaacggcataaactcaatgcgatgggggcatttgccgaagcgcaaacctgt
cgccgtttggtgctgctcaactattttggtgaaggtaaacagcagccatgcggtaactgc
gatatttgtctggatccgccaaagcgctacgatggtctggcagatgcgcaaaaggcgctc
tcttgcgtctatcgggtagggcaacgctttggcttagggtacatcgttgaggtgctgcgt
ggggcgaataaccagcgtattcgtgagatgggccatgacaagctttcggtgtacggcatt
ggccgtgagcaaacccatgaacactgggtcagcgtcttgcgccagttgatccatttgggg
ctgctcagccagaatattgcccagttctctgccttgcaactgactgaagcggcgcgcccg
gtcttacgcgcagagctgccattacaactggcggtaccgcgtattcagagcctgaaagtg
cgtagcagtgccaatcagaaatcctatggtggcaattatgatcgcaagttgttcgctaag
ctgcgcaaactgcgtaaatcaattgctgatgaaggcaatatcccgccttatgtggtgttt
aacgatgcgaccttgctggagatggctgagcagatgccgattactgccagcgagctattg
agcgtgaatggtgtcggtcagcgtaaactagaacgttttggtgcaccatttatggccctg
atccgtgatcatgtggataacaacgatgactaa
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