Yersinia pestis Pestoides F (biovar Antiqua): YPDSF_3886
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Entry
YPDSF_3886 CDS
T00505
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ypp
Yersinia pestis Pestoides F (biovar Antiqua)
Pathway
ypp03030
DNA replication
ypp03410
Base excision repair
ypp03420
Nucleotide excision repair
ypp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ypp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YPDSF_3886
03410 Base excision repair
YPDSF_3886
03420 Nucleotide excision repair
YPDSF_3886
03440 Homologous recombination
YPDSF_3886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ypp03032
]
YPDSF_3886
03400 DNA repair and recombination proteins [BR:
ypp03400
]
YPDSF_3886
Enzymes [BR:
ypp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
YPDSF_3886
DNA replication proteins [BR:
ypp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
YPDSF_3886
DNA repair and recombination proteins [BR:
ypp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
YPDSF_3886
NER (nucleotide excision repair)
GGR (global genome repair) factors
YPDSF_3886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH
Obc1_cap
Prok-E2_E
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ABP42229
LinkDB
All DBs
Position
complement(4457666..4460464)
Genome browser
AA seq
932 aa
AA seq
DB search
MAQIAENPLILVDGSSYLYRAYHAFPPLTNGSGEPTGAMYGVLNMLRSLLLQYRPSHVAV
VFDAKGKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGT
LAREAEKAGHSVLISTGDKDMAQLVTPNITLINTMNNTILGPQDVCDKYGVPPELIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSAKLEQNK
DVAYLSYKLATIKTDVELDVTCDELTVSPPDDKQLHQLFSRYEFKRWLADVEAGKWLDSK
KDRPTGQTSSQSFVAADTAPTAEVTAVLSQENYQTILDEKALADWIERLKAAEVFAFDTE
TDGLDTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATLKPLLEDDKALKV
GQNLKFDKSMLARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIA
GKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPIL
SRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLP
ILKKTPGGAASTNEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHT
SYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHL
SQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQL
GIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRK
AAEREAINAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELVFEVHESVLQSA
EQKIRELMEQSMQLAVPLKVDVGVGANWDQAH
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggctcagattgcagaaaacccattgatccttgttgacggttcctcttacctctaccgt
gcttaccatgctttcccaccactgactaatggtagcggggagccaaccggtgcgatgtat
ggcgttctgaacatgctacgcagtctgctgctgcaatatcgaccaagtcatgttgcagta
gtttttgatgcaaaaggtaaaacgttccgtgatgaactttttgctgaatataaatcccac
cgaccgccaatgccggatgatttacgggtgcaaattgaacctcttcatcagatggttaaa
gcgatgggattgcctttattggtcgtttctggcgtcgaagctgatgatgttattggcacc
ctagctcgggaagccgaaaaagcaggccattcggtattaatcagtactggtgataaagac
atggcgcaattagttacgccgaatatcactttgatcaataccatgaataacactatttta
gggccgcaggatgtttgcgataaatatggtgtccctcccgaactgatcattgattttctc
gctctgatgggtgactcctccgataatattccgggagtacctggtgttggcgaaaaaaca
gcacaggctttattgcaaggtttgggtgggttggatacgttattcagtaatctggataaa
atatcaaccttgacgttccgtggtgcgaaaacaatgtcggccaagctagagcaaaataaa
gacgttgcttatctctcctataaattggctactatcaagacagacgttgagttagatgta
acctgtgatgagctaaccgtttctcctcccgatgataaacagttacatcagttattcagt
cgttatgaatttaagcgttggctggctgatgtcgaagccggcaaatggttggacagtaaa
aaagatcggccaacagggcaaacaagcagtcaatcttttgttgccgcagatacggcccct
actgctgaagtcaccgcagtgctttcacaagagaattaccagactattttagatgagaaa
gcattggctgattggattgagcgccttaaagccgctgaagtttttgcttttgatactgaa
actgatggccttgatacccttagctgtaacttaattgggatgtcttttgctgtcgctcca
ggtgaagcggcttatctgcctctggctcatgattacctggatgccccgccccaacttgac
cgtgactgggttctggcgaccctgaaaccacttctggaagacgataaggcgcttaaagtt
gggcagaacctcaagttcgataaaagtatgctggctcgttatggtatcgatctaaaaggt
atcgctttcgataccatgctggagtcttatgttttggatagtgttgcgggccgtcatgat
atggacagcttggcggagcgctacctcaatcataaaacgattacgtttgaagagattgcc
ggtaaaggtaaaaatcagctaacgtttaatcagattgcgttggagcaagctggcccgtat
gccgcagaggatgccgatgttacccttcaattacatttggtcttatggccaaaattacag
caaagtgaaggcctcaagcgggtattccaagaaattgagatgccgttattgccgatcttg
tctcgtattgagcggactggcgtattgattgaccaaaatatattagcggcacactcaaaa
gagctcaccatccgtttggatgagctggaaaagcaggcccatgaattggctgaagagcca
ttcaacctggcatcacctaaacagctacaggctattctttatgaaaagcaaaaattgcct
atcttgaagaaaacacctggaggcgcggcgtcaacgaatgaggaagtgctggctgagttg
gctctggattatcctttgccgaaggtgattctggaatatcgtggtctggcgaaactaaaa
agcacttacaccgacaaattgccgctaatgattaaccccgtctccggtcgggtacacact
tcctatcatcaggcagtgacagcaaccgggcgcttgtcttcccgcgatcctaacctacaa
aatatccctgtacgtaatgaagaggggcgacgtattcgccaggcctttattgcaccgaag
ggctactgcattatggcggccgactattcgcaaattgaactgcgtattatggcgcatttg
tcgcaggataacgggctgttagctgcatttgctgctgggcaggatattcaccgggcaacc
gccgcggaagtatttggttcgccattggaaaaagtgacgacggagcagcgtcgtagcgca
aaagcgattaattttggtttgatttatggcatgagtgcttttggcttggcacgccagttg
gggatccctcgtggagaggctcaacgttatatggatctctattttgagcgttatccgggg
gtgttggagtatatggagcgtactcgtaaacaggctgctgagcagggctatgtcacgaca
ctggatggtcgccgcctctatctgccggatattcactcacggaatgcaaaccgtcgaaaa
gcggctgaacgtgaggcgattaatgcccctatgcaaggtacggctgcggatattatcaag
cgggcgatgattgcggtggatggttggttacagcaagagccagaaccgttggtgcgtgtc
atcatgcaagtacacgatgaattggtctttgaagtgcatgaaagtgttttgcaaagtgct
gagcagaaaatccgtgagttgatggagcaaagtatgcaactggctgtgccattgaaggtg
gatgtcggtgttggcgctaactgggatcaagctcattag
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