Yersinia pseudotuberculosis ATCC 6904: DJ40_147
Help
Entry
DJ40_147 CDS
T03307
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ypq
Yersinia pseudotuberculosis ATCC 6904
Brite
KEGG Orthology (KO) [BR:
ypq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ypq03016
]
DJ40_147 (rnb)
Enzymes [BR:
ypq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DJ40_147 (rnb)
Transfer RNA biogenesis [BR:
ypq03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DJ40_147 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AIN13262
LinkDB
All DBs
Position
175429..177363
Genome browser
AA seq
644 aa
AA seq
DB search
MFQDNPLLAQLKQQLHTQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPQMKKVMHGDRI
IATLHTDKDREIAEPETLVEPFLSRFVGRVQRKDDRLSIVPDHPLLRDAIQCRPVRELTH
SFQNGDWAVAEMCRHPLKGDRAFQADLTAFITNGEDHFVPWWVTLARHNLEREAPAMVES
ALNDAELEREDLTALNFVTIDSASTEDMDDALFVQDNGDGSWLLTIAIADPTAYVVENSE
LDLTARKRAFTNYLPGFNIPMLPRDLSDNLCSLRPNERRPVLVCRVTITEEGALSNDIRF
SAAWVESKAKLVYDDVSDWLEGNNRWQPQDTAIAEQITLLKRICDARSNWRQQHALVFKD
RPDYRFLLGEKGEVLDIIVEHRRIANRIVEECMIAANVCAALALREHLGFGIYNVHTGFD
PALVEQAASVLKANGVGADPQALLTLPGFCELRRHLDALPTQFLDSRIRRFQTFAEISTV
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAMITGQQAEKPQEEITVQLAERRRLNRM
AERDVGDWLYARYLQPQAGTDTRFTAEIIDITRGGLRVRLLDNGAVAFIPAPFIHAVRDE
VVCSQETGTVQIKGETVYSQSDKIEVRIAEVRMETRNVIARPVA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctggcgcagctaaaacagcaacttcacactcagacccca
cgcgttgaaggcgtcgttaaaggtactgagaaaggctttggctttcttgaggtagatggg
cagaaaagttactttattccgcctccgcagatgaagaaggtcatgcacggcgatcgcatt
attgccaccctgcatacggataaggatcgtgaaattgctgaacctgaaacattggttgag
ccatttttatcccgctttgttggccgggtgcaacgaaaagatgatcgtctgtctatcgtg
cccgaccaccctttattacgtgatgctattcaatgccgcccagtacgtgaactgacgcat
agcttccaaaacggtgattgggcagtggctgagatgtgccgccacccattaaaaggcgac
cgcgcctttcaggctgacctaaccgcgtttattaccaatggtgaagaccacttcgttcct
tggtgggtaacactggctcgccataaccttgagcgtgaagcccctgctatggtcgaatcg
gccttaaatgacgccgagcttgagcgtgaagacttaaccgcacttaattttgtcactatc
gacagcgccagcactgaagacatggatgatgcgctgtttgtccaagacaatggcgacggt
tcatggttattgaccattgccattgcagacccaacagcttacgtcgtcgaaaacagtgaa
ttggatttaaccgcccgtaagcgtgcttttaccaattatctgccgggttttaacatcccg
atgcttccgcgtgatttgtccgacaacctctgttcactgcgcccaaatgaacgtcgccca
gtattggtttgccgtgtgacgatcacagaagaaggggcgctaagtaacgatattcgtttc
tccgctgcttgggttgaatcaaaagccaaactggtttacgacgatgtctctgactggttg
gaaggaaataatcgctggcagccacaagataccgctattgcagagcagattacgttactg
aaacgtatctgtgacgcccgtagcaactggcgtcaacaacatgcgctggtctttaaagac
cgcccagactatcgcttcctgttgggggaaaaaggcgaagtgctggatatcattgttgag
catcgtcgtatcgccaaccgcattgtagaagaatgtatgattgcggcgaacgtctgtgcg
gcattggcgttacgggaacacctcggttttggtatttataacgtgcataccggttttgac
ccggcattagtcgaacaagcggctagcgtattgaaagccaatggtgttggtgccgatcct
caagccctgctgacgttacccggtttctgtgagttacgccgtcaccttgatgccctgcca
acacagttcctcgacagccgtattcgccgtttccagacatttgctgaaattagtactgtc
cccggtccgcattttggcctggggcttgaagcctatgccacctggacatctccaatccgt
aaatacggcgacatggtcaatcatcgcctgctgaaagcgatgattactggtcaacaagca
gaaaaaccacaagaagagatcacggtccaattggctgaacgtcgccgcctgaatcgcatg
gctgaacgtgatgtcggtgattggttgtatgcccgttatctgcaaccacaagcaggaact
gacactcgtttcacggcagagattattgatatcacccgcggtggcttgcgtgtgcgttta
ctggataacggtgccgttgcctttattcctgcgccgtttattcacgcggtgcgtgatgaa
gtggtctgcagccaggaaaccggtactgtgcagatcaaaggcgaaacagtttatagccaa
agtgacaaaatcgaggtacgtattgcggaagttcgcatggaaacccgtaatgtcattgct
cgcccagtagcttaa
DBGET
integrated database retrieval system
