Yersinia pseudotuberculosis ATCC 6904: DJ40_1635
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Entry
DJ40_1635 CDS
T03307
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ypq
Yersinia pseudotuberculosis ATCC 6904
Brite
KEGG Orthology (KO) [BR:
ypq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ypq03019
]
DJ40_1635 (hrpB)
Enzymes [BR:
ypq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DJ40_1635 (hrpB)
Messenger RNA biogenesis [BR:
ypq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DJ40_1635 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
HA2_N
AAA_22
DUF2934
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIN14505
LinkDB
All DBs
Position
complement(1789484..1791973)
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AA seq
829 aa
AA seq
DB search
MVSERKNDVAIAALPVSEVLGELLSALQSSSQVLLHAPTGAGKSTWLPLQILQQSQFLNS
GSPGRIIMLEPRRLAAKNVAYRLAQQLGELPGQTVGYRMRAESKIGPDTRLEVVTEGILT
RMLQQDAELQGVSLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNQRLS
ALLPSAPAIVSAGRSFPVERSYQPLSSHERLEEGVASRVKRLLNEQPGSLLLFLPGVSEI
HRVMERLHGEVASDTDLCPLYGALPLSEQQKAIQPAAIGRRKVVLATNIAETSLTIEGIR
LVVDSGLERVARFDIKNGLTRLVTQRISQASMVQRAGRAGRLEPGICWHLFAKEQAERAA
EYSEPEILNSDLCGLWLELLSWGCQDAAQLCWLDHPPAAALAVARDLLGRLDAIDDQGQL
TATGRTMATLGCEPRLAAMLCFGAGHSPDALATAALLAAILEEPPRSGQIDLHDWLSRPQ
PHWQRRARQLTQRLNARGGSVDHALAAQLLALAYPDRIAQQRGQDGRYLLANGMGAAMAQ
DEALSRSPWLVAVGLLQNHSGPDARILLALPVDIEQLVTCLPRQVEERTVVEWDDEKGTL
RAWRRWQIGRLILRAQPLAKPDDAALQQALLNWVREQGLQILNWDEPAEQLRTRLQCAAR
WLPEAPWPAVDDDSLQDKLALWLQPSLSGVRDLRGLRQVNIAEALTRLLDWKQRQRLDTE
LPTHYTVPTGSRLPIRYYVDRPPVLAVRLQEVFGEQQSPMLASGRVAVVLELLSPAHRPL
QITGDLAAFWQGAYREVQKEMKGRYPKHVWPDDPAHTRPTRRTKKYQDK
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
gtggtgagtgagagaaaaaatgatgttgcgatagcggcgttaccggtgagtgaagtgctc
ggcgagttgctctctgcattgcaatcctcatcgcaagtcctgcttcatgccccaaccggt
gccggtaaatctacctggctgccgctacaaatcttgcaacaaagtcagtttcttaatagc
gggtcaccgggccgcatcattatgctggagccacggcgactggcggcaaaaaatgtggct
taccgtttggcgcaacaattgggtgaattgcccggccagacagtaggttaccggatgcgc
gcagaaagcaagatcgggccggatacgcgtctggaagtggtgaccgaaggtattttgact
cggatgctacaacaggatgccgagcttcagggcgtgtcattggtgatccttgatgaattc
cacgaacgcagtctgcaagcagatttggcgctagcgttattgctggatgtgcaacagggg
ctgcgcgatgatctgaaactattaatcatgtcagccacgctggataaccagcgcctttct
gctttgttaccctccgctccggccattgtctcggctgggcgcagtttcccggttgaacgc
agttatcagccgctctccagccatgaacggttggaagagggggttgccagccgcgttaaa
cgcttgctaaatgaacagcccggttccttgttgctgtttttaccgggtgtcagtgaaatc
catcgagtgatggaacggctgcatggcgaggtcgccagcgataccgatttgtgcccgctg
tacggtgctttgccactcagtgaacagcaaaaagcgattcaaccggccgctatcgggcga
cgtaaagtggtgctggcaaccaatattgccgaaaccagtttgaccattgagggcatccgg
ttggtggttgatagcgggctggaacgggttgcgcgttttgatatcaaaaacggtctgact
cgcttggtcactcagcgtatcagtcaggcgtcaatggtccagcgcgcaggccgtgccggg
cggctagaaccgggtatctgttggcatctgtttgccaaagagcaggccgaacgggcggcg
gaatacagtgaaccggaaatactgaacagcgatttatgcggtctgtggttggaattactg
agttggggatgtcaggatgcggcgcaactctgttggctcgatcaccccccggcagcggca
ctggctgtggcccgtgatttattagggcgattggatgccattgatgaccaagggcagttg
acggccacggggcgcaccatggcaacgctgggctgcgaacctcgattggcggccatgttg
tgctttggggcggggcatagccccgatgcactggctacggctgcgttgttggcggctatt
ttggaagaaccccctcgctctggccaaatagatttacatgactggctcagccggccgcag
cctcactggcaacggcgcgccagacaactgacacaaaggcttaacgcgcgcggaggcagt
gtagaccatgcgctggccgcacaattgttggcgctggcttatccggataggatcgcacag
cagcgggggcaggatgggcgctacctgctggctaacggcatgggggctgccatggcgcag
gatgaggcgctatcgcgatcaccctggctagtggcggttgggctactgcaaaaccacagc
gggccggatgcacgtattttgctggccttgcccgttgacatcgaacagttggtgacgtgt
ctgccgcggcaagtggaagagcgcacggtggtggagtgggatgatgaaaaaggtacgctg
cgagcctggcggcgctggcaaattgggcgtttgatcctgcgggcgcagccattggctaaa
ccggatgacgcggcattgcagcaggccttgctaaactgggttcgggagcaaggattacag
atacttaactgggatgaacctgccgagcagctacgtacccgcttacaatgtgctgcccgt
tggttgccagaggcgccatggcctgcggtcgatgacgacagtttgcaggataaactggcg
ctctggttgcagccgtcattatccggtgttcgtgatctacgtgggcttcggcaggtgaat
attgctgaagccttaacccgcttgttagattggaaacaacgccaacggctggataccgaa
ctgccaactcattacactgtgcccactggcagtcgcctgccaatacgttattatgtcgac
cggccgccggtgttggcggtacgtttgcaggaggtttttggtgaacagcaaagccctatg
ctggcgagcgggcgggttgcggtggtgcttgaactgctttctcccgcccatcggccatta
cagattaccggcgatttagcggcattctggcagggggcgtatcgtgaggtacaaaaagag
atgaaagggcgttaccccaaacatgtctggcctgatgacccggcacatacccggccaacc
cgcagaaccaaaaaatatcaagataagtga
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