Yersinia pseudotuberculosis ATCC 6904: DJ40_3107
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Entry
DJ40_3107 CDS
T03307
Name
(GenBank) RNA polymerase sigma factor, FliA/WhiG family protein
KO
K02405
RNA polymerase sigma factor FliA
Organism
ypq
Yersinia pseudotuberculosis ATCC 6904
Pathway
ypq02020
Two-component system
ypq02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ypq00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
DJ40_3107
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DJ40_3107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ypq03021
]
DJ40_3107
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
ypq02035
]
DJ40_3107
Transcription machinery [BR:
ypq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DJ40_3107
Bacterial motility proteins [BR:
ypq02035
]
Flagellar system
Flagellar assembly proteins
Stator
DJ40_3107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_38
UPF0122
HTH_Tnp_ISL3
HTH_23
MarR_2
UPF0175
DUF4143
GerE
Motif
Other DBs
NCBI-ProteinID:
AIN13786
LinkDB
All DBs
Position
3461514..3462209
Genome browser
AA seq
231 aa
AA seq
DB search
MENREFEACLTLTAEEEGKYLNAYLPLVKRIVRQLSFQADSVIGKEDMQQIALMGLLEAL
RRYGHPDGQFAAYAVHRIRGSILDQLREHDWRPRRLRQKTHKTNEAIRQIAKRLGHEPNF
EEISAELNLTADEYQEYLLLENAGAMESLDEILALEAHNDILQSRDLEENIIIEDNLKQA
ISTLDEREQMILHLYYQQELSMKEIAQVLDLTEARICQLNKKLVQKIKSFF
NT seq
696 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatagagagtttgaagcgtgcttaacgctcaccgccgaagaggaaggaaaatat
ctgaatgcgtatttaccgctggtaaaacgtattgtcaggcagctctctttccaggcggat
agcgtcatcggcaaggaggatatgcagcaaattgcattgatggggttattagaggcactg
cgccgctatggtcaccctgacgggcaatttgccgcttatgccgttcatcggatccgcggt
tcaatattggatcaattgagggagcatgattggcggccccgccggttgcggcagaaaacc
cataaaaccaatgaggctatccggcaaatcgcgaaacgtctgggccatgaacctaacttt
gaggagatcagcgctgaattaaacctgacggcagatgaatatcaggaatatcttttgttg
gagaatgcgggtgcgatggaaagcctggatgaaattctcgcattagaggctcacaatgat
attttgcaaagtcgggatctggaagagaatattattattgaagataatctcaaacaggcg
attagcacattagatgaacgtgaacagatgattttgcatctttattatcagcaagaactg
agtatgaaagagattgcacaagtactggatctcacggaggcacgcatctgccaacttaat
aagaaattagtacaaaaaattaaatcatttttttaa
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