Yersinia pseudotuberculosis ATCC 6904: DJ40_3345
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Entry
DJ40_3345 CDS
T03307
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ypq
Yersinia pseudotuberculosis ATCC 6904
Pathway
ypq03410
Base excision repair
ypq03430
Mismatch repair
ypq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ypq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DJ40_3345 (recJ)
03430 Mismatch repair
DJ40_3345 (recJ)
03440 Homologous recombination
DJ40_3345 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ypq03400
]
DJ40_3345 (recJ)
DNA repair and recombination proteins [BR:
ypq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DJ40_3345 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DJ40_3345 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DJ40_3345 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AIN13732
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Position
3778164..3779897
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AA seq
577 aa
AA seq
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MTLKTQLRRREAADDSHLPAQLPPLLRRLYASRGVKDAQELERGVKGLLAWQKLDGIDAG
VTLLQQALADRRRIVIVGDFDADGATSTALAVLALRSMGGSNLDYLVPNRFEDGYGLSPE
VVEQVAARGAELIVTVDNGISSHAGVDLAHAKGIQVLVTDHHLPGETLPAADAIINPNLA
GCDFLSKSLAGVGVTFYLMLALRARLRECGWFEQRTLAVPNLAELLDLVALGTVADVVPL
DANNRILVHQGLSRIRAGKCRPGIRALLEVANRDARQLVANDLGFSLGPRLNAAGRLDDM
SIGVALLLSDDIAQARALAIDLDTLNQTRREIEQGMQVEALQLCDQLERTSSELPYGIAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGEGLLKGSGRSVAGLHMRDALERLDTLNP
GLILKFGGHAMAAGLSLEEGKFDEFRQRFADLVGEWMDASQLEGVIWSDGELNGAELSLE
TAELLRDGGPWGQSFPEPTFDGKFRILQQRLVGERHLKLMVEPLNGGPLLDGIAFNVDTT
LWPDSSVREVKLAYKLDINEYRGNRSVQLLVQHLWPY
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgacgttgaaaacccaacttcgccgccgtgaggcggcagatgacagccatttacctgcg
caattgcccccgttactgcgtcgtctctatgctagccgtggcgtaaaggatgcgcaggag
ttggagaggggcgtgaaaggcctactggcatggcaaaaactggatggtattgacgctggc
gtcaccttattacaacaagccctggctgatcggcggcgtattgtcattgtcggcgatttt
gatgctgacggcgcgaccagtaccgcgttggcggtgctggctttgcgcagtatgggcggc
agtaaccttgattatctggtacctaaccgatttgaagatggttatgggcttagccccgaa
gtggttgaacaagttgcggccagaggggcagagctgattgttactgtggataacggtatt
tcctctcatgccggggtcgatctggctcatgccaaaggtattcaggttctggtgacggac
caccatttgccgggcgaaacattacccgcggcggatgccatcattaacccaaatctggcc
ggttgcgattttttatccaagtcattggcgggggtcggtgtcactttctatttgatgctg
gcgctgcgcgcccgtctcagggaatgtggttggtttgaacaacgtaccttagcggttcct
aatctggctgaactgttggatttggtggcattgggtacggtggcagatgtggtgccgttg
gatgccaataaccgtattttggtccatcaagggttaagtcgtattcgtgcggggaagtgc
cgtccaggaattcgcgcattattggaggtcgctaaccgtgatgcgcgtcaactggttgcg
aacgatttaggcttttctcttggcccacggttgaatgcggcggggcgtttagatgatatg
tccatcggggtggcgctactgctgagtgacgatattgctcaggcgcgagcactggcaatc
gatcttgacaccttgaatcaaacccggcgcgagatagaacagggtatgcaggttgaagct
ttgcaactgtgtgaccagttggagcgcaccagcagtgaattaccttacggtatcgcgatg
taccatccagaatggcatcagggcgttgtgggtattttggcttcacgcatcaaagaacgc
tttcaccgcccggttatcgcttttgccccggcgggagaagggttattgaaagggtcgggt
cgtagcgttgcgggtttgcatatgcgtgatgcccttgagcgtctggacactctgaaccca
gggttaatactgaagtttggtgggcacgccatggcggcagggttatcgctggaggaaggt
aaattcgatgaattccgccagcgttttgcagatttagtcggtgaatggatggatgcttcg
caattggaaggcgttatttggtctgatggcgaactgaacggtgctgagttatcactggag
accgcagagctattgcgcgacggtggtccatgggggcaatctttccctgagccgaccttt
gatggcaaattccgtatcttacagcagcgcttagtgggtgagcgtcacctgaaactcatg
gtagagccgctgaatggcgggcctttgttagatggaattgcctttaatgtcgataccact
ttgtggccggatagcagcgtgcgagaagttaaattggcctataaactggatattaatgaa
tatcgtggtaatcgtagtgttcagttgctggttcaacacttgtggccttattag
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