KEGG   Yersinia pseudotuberculosis ATCC 6904: DJ40_643
Entry
DJ40_643          CDS       T03307                                 
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
  KO
K01141  exodeoxyribonuclease I [EC:3.1.11.1]
Organism
ypq  Yersinia pseudotuberculosis ATCC 6904
Pathway
ypq03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ypq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    DJ40_643 (sbcB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ypq03400]
    DJ40_643 (sbcB)
Enzymes [BR:ypq01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     DJ40_643 (sbcB)
DNA repair and recombination proteins [BR:ypq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     DJ40_643 (sbcB)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     DJ40_643 (sbcB)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      DJ40_643 (sbcB)
SSDB
Motif
Pfam: Exonuc_X-T_C RNase_T YkoP
Other DBs
NCBI-ProteinID: AIN13565
LinkDB
Position
683235..684665
AA seq 476 aa
MSDKNKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQP
EAVMITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFY
DPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAH
DAMSDVYATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARG
NTSWVAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKL
VHINKCPVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVT
DDVDTQLYNGFFSDADRATMKIIQQTEPQNLPALDLTFQDPRLEALLFRFRARNYPNTLN
DSEQQRWLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLVS
NT seq 1431 nt   +upstreamnt  +downstreamnt
atgtcagataaaaataagcaaccaacattttacgtccacgattatgaaaccttcggccag
cggccagccttggatagacctgcgcaatttgccggggtacgtaccgatctggatttcaat
ctcgtcgaagagccattggtcatttactgcaagcccgcagatgattatctgccacagccc
gaagcggtgatgataaccggtattaccccccaacatgctttagccaacggggtcaatgaa
gctgagttttcccgccaaatacaccaggccttttcggtacccggcacctgtatcctcggc
tacaacaatattcgttttgatgatgaagttagtcgcaacattttctatcgtaatttttat
gatccctatgcctacagttggcaggggggaaattcccgttgggatctgttggatgtgatg
cgcgcctgctatgccctgcgcccagaaggtattgtttggcccgaaaatgatgatggcctg
cccagctttaaactggaacatttgaccaaagccaatggcgtcgaacatttacaggcacat
gatgcgatgtccgatgtctacgccaccattgcaatggcaaaattggtgaaacaggcccaa
ccccgtctgtttgattatctgtatcagcaccgcagtaagcataagatcaatgcgttgatt
gatatcgcggagatgacaccactggttcatgtgtctggcatgtttggtgccgcacggggc
aacaccagttgggtggcaccgctggcctggcaccccgagaataaaaatgcggtaattatg
tgcgatctggccggggatatgtccccattactggagttggacagcgatacattgcgcgaa
cgtctgtatacccgccgtgacaagctccaagcccaagagtcggcaatccctatcaaactg
gtacatatcaataaatgtccggtattggctcctgcaaaaactctgctgcccgagaatgct
gatcgcttggggattgatcgccagcgttgtttgcaaaatctgcaactgctgcggcaaaac
ccgcaggtgcgtgaaaaagtggtcgcgctgtttgcacaagctgagccattcgcggttacc
gatgatgtggatacacagttgtataacggctttttcagtgatgctgatcgcgccaccatg
aagattatccagcaaactgagccacaaaatctgccagcactggatttgacatttcaggac
ccacggttggaggccctgctattccgcttccgcgcccgtaactacccaaataccttgaat
gacagtgaacaacagcgttggttacagcatcgccgtgaagcgcttagccctgagcgggta
caagattatgttttgcaactggaacaattttataaccagtatgaagacgataaagagaaa
cttgcgctgctaaaagcgttgtttgaatatgccaagggattagtgagttaa

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