Yersinia pseudotuberculosis EP2/+: BZ20_3136
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Entry
BZ20_3136 CDS
T03678
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ypr
Yersinia pseudotuberculosis EP2/+
Pathway
ypr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ypr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BZ20_3136 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ypr03400
]
BZ20_3136 (recB)
Enzymes [BR:
ypr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
BZ20_3136 (recB)
DNA repair and recombination proteins [BR:
ypr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BZ20_3136 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
vWA-TerF-like
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AJJ05495
LinkDB
All DBs
Position
3586735..3590397
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AA seq
1220 aa
AA seq
DB search
MTPTTPQRLEPLALPLYGERLIEASAGTGKTFTIGVLYLRLLLGLGGDAAFRRPLMVEEI
LVVTFTEAATEELRGRIRDNIHGLRIACVRGVSDDPMYQALLAEITDWAVAAAQLLAAER
QMDEAAIYTIHGFCQRMLANNAFESGILFEQTLVQDELPLWRQACADFWRRHCYPLPLVI
ARAVSQEWSGPEALLSDLSAYLQGETPKFRQAPGDDETILSRHQHVVTQIDALKAEWRLA
APELEALISRSGVDKRSYSSKHLPNWLEKVGLWAEQETEDYQLPKELEKFRQSVLLEKTK
KGAAPQHTLFSAIDSIFEQPLTLRDLILARAISEIRFSVQQEKRQRAELGFDDLLSKLDA
ALQQSGGELLAQSIRTRYPVAMIDEFQDTDPQQYRIFHTVYGGQEACALLLIGDPKQAIY
AFRGADIFTYIRARSEVSAHYTLETNWRSSFPMVQSVNRLFSLVNTPFLFEQIPFINVAA
AKKNHDLSFEIKGEKQPALHFWLQPGDGVGVSEYQQVMARQCAAQIRDWLTAGQQGQAEL
LTTKGPKPVQASDITILVRSRAEAALIRDALSALAIPSVYLSNRDSVFETTEAKDLLWLL
QAVLAPEQERALRSAMATGILGLDARMLDALNHDERAWDALVDEFDHYRQHWQRRGVLPM
LREMMARRHLAENLLATPGGERRLTDLLHLGELLQEAASQLDSEHALIRWLAQQIAQPNP
QSDSQQLRLESDRHLVRVVTIHKSKGLEYPLVWLPFIGNFRQQQNVLYHDRHSFEALLDL
NADEESQALAEEERLAEDLRLLYVALTRSVYHCSVGIAPLIKGGRKKQGESDMHRSALGY
LVQHGQPGDAHVLSEKLTELARSSNGDICVSPVEPPDDKPWQPQHEALPELTARHFTRKM
QDYWRVTSYSGLQQSDSTKKLYGSATGDVSQALGAPLQVLLPRLDIDAVGEQAVVTEDGH
LTPHTFPRGAAPGTFLHDLLEPLDFSQPIELAWLSERLQQQGFSEQWAPVLHQWLNDIVQ
TPLTDTGATLAGLSPERKQAELQFYLPIDSLLRAEVLDRLIKQYDPLSRQCPVLDFQQVR
GMLKGFIDLVFCWQGQYYLLDYKSNWLGEDSRAYTVEAMTQAMAEHRYDLQYQLYTLALH
RYLRHRLADYDYQRHFGGVIYLFLRGVDQQHSGHGIFNCRPEQKLIEEMDRLFSGTIGSN
ATASDKSGSNVIHSGERASR
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgacacccacgactccccagcggcttgagccgctggcgcttcccctctatggcgagagg
ctgatagaagcctctgccggtactggtaagacatttaccatcggggtcctttatcttaga
ttgttgcttgggttagggggcgatgctgcattccgtcgccctttgatggtggaggaaatc
ctagtggtgacctttactgaagccgcgaccgaagagctcagggggcgaattcgcgataat
attcatgggttgcgtatcgcttgcgttcggggagtcagtgatgacccaatgtaccaggct
ctattagccgaaatcaccgattgggccgtagccgccgcgcaattattggcggctgagcgt
cagatggatgaagccgcgatttacactattcatggtttctgccaaagaatgctggcaaat
aacgcttttgaatccggcattttattcgaacaaacgttagttcaggatgaactcccgtta
tggcggcaggcctgtgctgacttctggcggcgtcattgttatccgcttcccttagtcatc
gcacgggcggtcagtcaggagtggagcgggccggaggcattactcagtgatctgagtgct
tatttacaaggtgaaacgccaaagtttcggcaagcgcccggtgacgatgaaacgatcctt
agccgccatcagcacgttgtgacacagattgatgcacttaaagcagagtggcgcttagcc
gcccctgaattagaagcattaattagtcgttctggcgttgataaacgcagttatagcagc
aagcatttacccaactggctggaaaaagtaggattatgggcggagcaggaaacggaagat
tatcaattacccaaagaactggaaaaatttcgccagtcggtgttattggaaaagaccaag
aagggagccgccccacaacatactttatttagtgcgatagactcgatatttgaacagccc
ctaacgttgagggatcttattttagcccgagccatcagcgaaatacggttttctgtacag
caggaaaaacggcagcgtgcagagctggggtttgatgatttactcagtaagttagatgcc
gcattacaacaatcggggggtgagttgctcgcccaatctattcgtacccgttatcccgtt
gcaatgattgatgaatttcaggataccgacccgcaacaataccgcattttccacaccgtt
tatggcgggcaagaagcgtgcgctttactgttgatcggtgatcctaaacaggctatttat
gcttttcgtggcgcagatatatttacctatattcgtgcccgttcagaagtaagcgcccac
tacacattggaaactaactggcgctcttcttttcccatggtgcaatcagtgaacaggcta
tttagtctggttaatacgcctttcttatttgagcaaatcccctttattaatgtcgccgcc
gccaaaaagaatcatgatttatcctttgaaattaaaggagaaaagcaacctgcgctacat
ttttggctgcaacccggtgacggtgttggtgtaagtgagtaccaacaagtaatggctaga
caatgtgcagcgcaaattcgtgattggttgactgccggccagcaggggcaagcagaacta
ctgaccacgaaaggaccaaaaccggttcaggcatcagatataaccatactggtgcgtagc
cgggcagaggccgcattgatacgtgatgcacttagtgcgctggcgatcccatcggtctat
ttatctaatcgtgacagtgtctttgagactacagaagccaaagatctcttgtggttactg
caagccgtgttagcaccagagcaggagcgcgcactacgtagtgctatggctacggggatc
ttggggttggatgccagaatgttggatgcgttaaatcacgatgagcgagcttgggatgcg
ctggtcgatgagtttgatcactatcgccagcattggcagcgccgtggggtattacccatg
ctgcgggagatgatggcccgccgccatttagctgaaaacttgttggcaacacccggtggg
gagcgtcggctgacagatttactacatcttggggaattactgcaagaggccgcctcgcaa
ctggatagtgagcacgcactaattcgctggttggcccagcaaattgctcaacccaatccc
cagtcagatagccaacaattacgcttggaaagtgatcgccatttggttcgagtggttact
atccataaatcgaaagggttggaatatccattagtttggctgccttttatcggtaatttt
cggcaacaacagaatgtgctttaccatgaccgacatagctttgaggctttactcgatctt
aatgctgatgaagaaagccaggctttagctgaagaagaacgtctggctgaggatttacgg
ctattgtatgtcgcgttgacgcgttcggtttatcattgcagcgtgggcattgcaccgctg
attaaaggggggaggaaaaagcaaggcgagagtgatatgcatcgcagtgcgttaggttat
ttggttcagcatggtcaacccggtgatgctcatgttctaagcgaaaagttaactgagtta
gcgcgctcatcgaatggtgatatttgcgtttcgcccgttgagcctcctgatgataaacct
tggcaaccacagcacgaagccttgcctgaacttaccgcccgccattttacccgaaaaatg
caagattattggcgcgtaaccagctattcaggtttacagcagtctgactctacaaagaag
ctgtatggttctgcaacaggggacgtatcgcaggctctgggggcaccattacaggtcttg
ttgccacggttggacattgatgccgtaggtgagcaggcggtggtgacagaagacggccat
ttaacacctcataccttccctcggggagcggccccagggactttcttacatgatttgctt
gagccattagattttagtcaaccgattgaattggcgtggttgtctgagcggctacagcaa
cagggttttagcgaacagtgggcaccggtgttacaccagtggctaaatgatatagtgcaa
acgccgcttaccgataccggggccactttggctgggttgtcgccagagcgcaaacaggcc
gagctacaattttatctacccatcgatagcctgctacgggccgaggtattagaccgttta
atcaaacagtatgatccactttcccggcagtgccctgtattggattttcaacaggttaga
gggatgctcaaggggtttattgacttggttttttgctggcaggggcaatattacttgctg
gattacaaatccaattggttgggtgaggacagtcgtgcttataccgttgaggcgatgaca
caagcgatggctgaacatcgctatgatctgcaataccaactttatactttggctttacac
cgctatttacgccatcgtttggccgattatgactatcaacgccactttggtggggttatt
tacctcttcttgcgcggcgttgatcagcaacattcagggcacggtatttttaattgccgg
cctgaacagaaactgattgaagaaatggatcgcttattcagtggcacaattggcagtaac
gcaaccgcgagtgacaaaagcggtagcaatgtcattcacagcggcgagagggcatcacga
tga
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