Yersinia pseudotuberculosis EP2/+: BZ20_3729
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Entry
BZ20_3729 CDS
T03678
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ypr
Yersinia pseudotuberculosis EP2/+
Pathway
ypr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ypr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BZ20_3729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ypr03019
]
BZ20_3729
03009 Ribosome biogenesis [BR:
ypr03009
]
BZ20_3729
Enzymes [BR:
ypr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BZ20_3729
Messenger RNA biogenesis [BR:
ypr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BZ20_3729
Ribosome biogenesis [BR:
ypr03009
]
Prokaryotic type
rRNA processing factors
BZ20_3729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AJJ08479
LinkDB
All DBs
Position
complement(4248782..4252414)
Genome browser
AA seq
1210 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQ
TPHYSVLRVRKGEEVPSLSYLLPQLHEAEMAQPLEEATIERKRPEQPALATFSLPTEVPP
EEAPTVAKAKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDASE
NRRNDRRNPRRQNNGRKERNDRTPREGRDNSSRDNTNRDNTSRDNANRDGANRDNSNRDN
SGRDNVSREGREDQRRNNRRPAQPTTTSQGQTEVVEADKAQREEQPQRRGDRQRRRQDEK
RQAPQEIKADVAEAPVIEEVQPEQEERQQVMQRRQRRQLNQKVRIQSANDELNTLESPVS
APVAQVVVAEVQEEVKLLPQITAQTDDDSANERTTNNENGMPRRSRRSPRHLRVSGQRRR
RYRDERYPAQSAMPLAGAFASPEMASGKVWVRYPVTPVVEQVVVEQVVVEQIAIEQTTTV
EQTAIVEQVSVANIVTAQLPVEQVQNTVAEQESSATPSVMTTPTVAVTLAPQHKPGGSSS
SAAAVPGRAPIVAAVPVVAETTAAETVVAKTEAAIDAVAVVESIAAVETATVEPVVTEEP
NVTEPAVAEPAIETDPVEETTSVVEIAPTVESTPMIEDTAVVVAATVVDTTPETASTVQD
DIVEETAVEAVNISETVAEETAITEPAAEAIATQQTTIAQETIAEPTVETAIDVVAVVKQ
PAVAHPEGVVFKHFSSAPMTKAPAPDYAPESPTKGHWERPTFDFSGKGSAGGHAAATQAT
APATKPQSVE
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcgactcagcaagaagagttgcgtgttgcccttgtagat
ggacagcgactgtatgatctggatattgaaagcccaggccatgaacagaaaaaagcgaat
atttataaaggtaaaatcacccgaatcgaacctagtctggaagccgcttttgttgattat
ggagcggaacgacatggtttccttccattaaaagaaatctctcgcgagtacttccccaat
aattactcttcccatggccgcccaaacatcaaagatgtcttgcgtgaaggccaggaagtt
attgttcaggttgataaagaagaacgcggcaataaaggtgctgcattaaccactttcatt
agtctggctggcagctatttggttctgatgccaaacaacccacgtgcgggcggtatttct
cgccgcatcgaaggtgatgaccgcaccgagctgaaagaagccctatcttccctgcaatta
cctgatggcatgggtctgattgttcgtactgcaggcgtgggcaaatctgctgacgcactg
caatgggatttgtcattccgcctgaagcactgggatgcgattaaaaaagcggctgaaggt
cgccccgcgcccttcttaatccatcaggaaagtaacgtgatcgtccgtgctttccgcgat
tacctgcgcccagacatcggcgaaatcctgattgataatccgaaggttctcgaactggca
aaagagcatattgctgcccttggtcgcccggatttcagcagcaaaataaaattgtatagc
ggtgaaattccgttattcagtcattaccaaattgagtcgcagatcgaatcggccttccaa
cgtgaagtgcgtttgccttctggtggctctatcgttattgacacgaccgaagcactgacg
gcgattgatatcaactcagcccgagccacgcgtggtggtgatatcgaagagaccgcgttt
aataccaaccttgaagccgctgacgaaattgctcgccaattacgtttacgtgaccttggt
ggtctgatcgttatcgacttcattgatatgaccccggtacgccatcaacgtgaagttgaa
aaccgtttacgcgatgctgtccgtcaggaccgtgcccgtatccagattggtcgtatctca
cgctttggtttgctggaaatgtcccgtcagcgcctcagcccatcgctgggtgaatccagt
caccacgtctgcccacgctgtagcggtaccggcaccgtacgtgacaatgaatcgctgtca
ctttctattctgcgtttgattgaagaagaagcgctgaaagagaatacccatgaagttcac
gccatcgtaccggtacaaatcgcatcgtacctgttgaacgaaaaacgtgaatcagtaaac
gctattgagaagcgtcaaggtggtgtccgtgccgtgatcgtgccaaacgatcagatgcaa
acaccgcactactctgtcctgcgcgtacgcaaaggcgaagaagtcccgtctctcagctat
ctgttgccacaactgcacgaagcagaaatggcgcaaccgctggaagaggccaccattgaa
cgtaagcgcccggaacaaccagcattggctaccttctctctgccaacagaagtgccacca
gaggaggcccctaccgtagccaaggctaaacctgcggttgcaacacccgccgcggttagt
actgacgtagaacaacctggcttctttagccgtttgttcagtggcttaaaaaatatgttt
ggtgcttccgctgaagcagaagtgcaacccgctgaagttgtaaaaaccgacgctagcgaa
aatcgccgtaatgatcgccgcaatcctcgccgccagaataatggccgtaaagagcgcaat
gatcgtactccacgcgaaggtcgtgataattccagccgcgataacaccaaccgtgataac
accagtcgtgataacgctaaccgcgatggcgctaatcgtgataattccaatcgcgacaac
agtggccgcgataacgttagtcgtgaaggccgcgaagatcaacgccgcaacaacagacgt
ccggcccagccaacgacaacatcgcaagggcaaactgaggttgttgaagccgataaagcg
caacgtgaagaacaaccacagcgccgtggtgaccgtcagcgtcgtcgtcaggatgagaag
cgtcaggcaccacaagaaatcaaagcagatgttgcggaagcccctgttatagaagaggta
caacctgagcaagaagaacgccaacaggttatgcaacgtcgtcagcgtcgccagttgaat
cagaaagtccgtattcaatcggcaaatgatgaactgaatacgttggaatctcctgtcagt
gcacctgttgcgcaggtggtggtggctgaagtacaagaagaagtgaagttactgccacaa
attactgctcaaactgatgatgacagtgctaatgaacgtactaccaataatgaaaatggt
atgccacgtcgttcccgtcgttcaccacgccatctgcgtgttagtggtcaacgccgtcgc
cgttatcgtgatgaacgttacccggcacaatcggccatgcctctggcaggggcttttgcc
tcaccagaaatggcatccggtaaagtgtgggttcgttatccagtgacgccagtcgttgaa
caggttgtcgttgaacaggttgtcgttgaacaaatcgccattgaacaaactacaaccgtt
gagcaaacagccatcgtcgagcaggtcagtgtagcgaatattgtcactgcgcaattgcct
gtagagcaggtgcaaaacaccgttgcagaacaagaatcgagtgcaactccatctgttatg
acaacaccaaccgttgcggtaacactggccccacaacacaaaccggggggttcttcatct
tcggctgctgcggttccaggccgtgcacctatcgttgctgcagtgcctgtcgttgctgaa
acgactgctgctgaaacggttgttgctaaaactgaagccgctattgatgcggtggctgtt
gtggaatcgatagctgctgtggaaactgcaactgtagaaccggttgttacagaagaaccg
aatgtcacagaaccggccgttgccgagccagcgattgaaactgatcctgtcgaagaaaca
acatcagttgtagagattgctccaaccgttgaatcaacgcctatgatcgaagatacggct
gttgtagtcgctgcgacggtggttgacactacaccagaaactgcgtcaaccgtgcaagat
gatattgttgaagagacagcagttgaagcggtaaatatctctgaaactgtggctgaagag
accgcaataacggaacctgctgctgaagccattgctactcagcaaaccactattgcgcag
gagaccattgctgaaccaacggttgaaaccgctattgatgtggttgcggtagtcaaacaa
cccgcggttgcgcatccggaaggggtggtgttcaaacacttctcttcagcgccaatgacc
aaagcgccagcacctgattacgcccctgaatcaccgaccaaaggtcactgggagcgtcca
acctttgatttctcaggcaaaggttctgctgggggtcatgccgcggctacccaggcaact
gcacccgcgaccaaaccgcaatctgttgagtaa
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