Yersinia pseudotuberculosis IP 32953 (serotype I): YPTB1569
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Entry
YPTB1569 CDS
T00195
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
yps
Yersinia pseudotuberculosis IP 32953 (serotype I)
Pathway
yps03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
YPTB1569 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yps03400
]
YPTB1569 (sbcB)
Enzymes [BR:
yps01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
YPTB1569 (sbcB)
DNA repair and recombination proteins [BR:
yps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
YPTB1569 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
YPTB1569 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
YPTB1569 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
YkoP
Motif
Other DBs
NCBI-ProteinID:
CAH20808
UniProt:
Q66C41
LinkDB
All DBs
Position
complement(1891312..1892742)
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AA seq
476 aa
AA seq
DB search
MSDKNKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQP
EAVMITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFY
DPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAH
DAMSDVYATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARG
NTSWVAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKL
VHINKCPVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVT
DDVDTQLYNGFFSDADRATMKIIQQTEPQNLPALDLTFQDPRLEALLFRFRARNYPNTLN
NSEQQRWLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLVS
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtcagataaaaataagcaaccaacattttacgtccacgattatgaaaccttcggccag
cggccagccttggatagacctgcgcaatttgccggggtacgtaccgatctggatttcaat
ctcgtcgaagagccattggtcatttactgcaagcccgcagatgattatctgccacagccc
gaagcggtgatgataaccggtattaccccccaacatgctttagccaacggggtcaatgaa
gctgagttttcccgccaaatacaccaggccttttcggtacccggcacctgtatcctcggc
tacaacaatattcgttttgatgatgaagtcagtcgcaacattttctatcgtaatttttat
gatccctatgcctacagttggcaggggggaaattcccgttgggatctgttggatgtgatg
cgcgcctgctatgccctgcgcccagaaggtattgtttggcccgaaaatgatgatggcctg
cccagctttaaactggaacatttgaccaaagccaatggcgtcgaacatttacaggcacat
gatgcgatgtccgatgtctacgccaccattgcaatggcaaaattggtgaaacaggcccaa
ccccgtctgtttgattatctgtatcagcaccgcagtaagcataagatcaatgcgttgatt
gatatcgcggagatgacaccactggttcatgtgtctggcatgtttggtgccgcacggggc
aacaccagttgggtggcaccgctggcctggcaccccgagaataaaaatgcggtaattatg
tgcgatctggccggggatatgtccccattactggagttggacagcgatacattgcgcgaa
cgtctgtatacccgccgtgacaagctccaagcccaagagtcggcaatccctatcaaactg
gtacatatcaataaatgtccggtattggctcctgcaaaaactctgctgcccgagaatgct
gatcgcttggggattgatcgccagcgttgtttgcaaaatctgcaactgctgcggcaaaac
ccgcaggtgcgtgaaaaagtggtcgcgctgtttgcacaagctgagccattcgcggttacc
gatgatgtggatacacagttgtataacggctttttcagtgatgctgaccgcgccaccatg
aagattatccagcaaactgagccacaaaatctgccagcactggatttgacatttcaggac
ccacggttggaggccctgctattccgcttccgcgcccgtaactacccaaataccttgaat
aacagtgaacaacagcgttggttacagcatcgccgtgaagcgcttagccctgagcgggta
caagattatgttttgcaactggaacaattttataaccagtatgaagacgataaagagaaa
cttgcgctgctaaaagcgttgtttgaatatgccaagggattagtgagttaa
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