Yersinia pseudotuberculosis IP 32953 (serotype I): YPTB2479
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Entry
YPTB2479 CDS
T00195
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
yps
Yersinia pseudotuberculosis IP 32953 (serotype I)
Pathway
yps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YPTB2479 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yps03019
]
YPTB2479 (rne)
03009 Ribosome biogenesis [BR:
yps03009
]
YPTB2479 (rne)
Enzymes [BR:
yps01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
YPTB2479 (rne)
Messenger RNA biogenesis [BR:
yps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
YPTB2479 (rne)
Ribosome biogenesis [BR:
yps03009
]
Prokaryotic type
rRNA processing factors
YPTB2479 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
CAH21717
UniProt:
Q669K5
LinkDB
All DBs
Position
2923037..2926729
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AA seq
1230 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQ
TPHYSVLRVRKGEEVPSLSYLLPQLHEAEMAQPLEEATIERKRPEQPALATFSLPTEVPP
EEAPTVAKAKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDASE
NRRNDRRNPRRQNNGRKERNDRTPREGRDNSSRDNTNRDNTNRDNTSRDNTNRDNTSRDN
ANRDGANRDNSNRDNSGRDNVSREGREDQRRNNRRPAQPTTTSQGQTEVVEADKAQREEQ
PQRRGDRQRRRQDEKRQAPQEIKADVAEAPVIEEVQPEQEERQQVMQRRQRRQLNQKVRI
QSANDELNTLESPVSAPVAQVVVAEVQEEVKLLPQITAQTDDDSANERTTNNENGMPRRS
RRSPRHLRVSGQRRRRYRDERYPAQSAMPLAGAFASPEMASGKVWVRYPVTPVVEQVVVE
QVVVEQIAIEQTTTVEQTAIVEQVSVANIVTAQLPVEQVQNTVAEQESSATPSVMTTPTV
AVTLAPQHKPGGSSSSAAAVPGRAPIVAAVPVVAETTAAETVVAKTEAAIDAVAVVESIA
AVETATVEPVVTEEPNVTEPAVAEPAIETDPVEETTSVVEIAPTVESTPMIEDTAVVVAA
TVVDTTPETASTVQDDIVEETVVGETAVEAVNISETVAEETAITEPAAEAIATQQTTIAQ
ETIAEPTVETAIDVVAVVKQPAVAHPEGVVFKHFASAPMTKAPAPDYAPESPTKGHWERP
TFDFSGKGSAGGHAAATQATAPATKPQSVE
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcgactcagcaagaagagttgcgtgttgcccttgtagat
ggacagcggttgtatgatctggatattgaaagcccaggccatgaacagaaaaaagcgaat
atttataaaggtaaaatcacccgaatcgaacctagtctggaagccgcttttgttgattat
ggcgcggaacgacatggtttccttccattaaaagaaatctctcgcgagtacttccccaat
aattactcttcccatggccgcccaaacatcaaagatgtcttgcgtgaaggccaggaagtt
attgttcaggttgataaagaagaacgcggcaataaaggtgctgcattaaccactttcatt
agtctggctggcagctatttggttctgatgccaaacaacccacgtgcgggcggtatttct
cgccgcatcgaaggtgatgaccgcaccgagctgaaagaagccctatcttccctgcaatta
cctgatggcatgggtctgattgttcgtactgcgggtgtgggcaaatctgctgacgcactg
caatgggacttgtcattccgcctgaagcactgggatgcgattaaaaaagcggctgaaggt
cgccccgcacccttcttaatccatcaggaaagtaacgtgatcgtacgtgcttttcgcgat
tacctgcgcccagatatcggcgaaattctgattgacaatccgaaggttctcgaactggca
aaagagcatattgctgcccttggtcgcccggatttcagcagcaaaatcaaattgtatagc
ggtgaaattccgttattcagtcattatcaaattgagtcgcagatcgaatcggccttccaa
cgtgaagtgcgtttgccttctggtggctctatcgttattgacacgaccgaagcactgacg
gcgattgatatcaactcagcccgagccacacgtggtggtgatatcgaagagaccgcgttt
aataccaaccttgaagccgctgacgaaattgctcgccaattacgtttacgtgaccttggt
ggtctgatcgttatcgacttcattgatatgaccccggtacgccatcaacgtgaagttgaa
aaccgtttacgcgatgctgtccgtcaggaccgtgcccgtatccagattggtcgtatctca
cgctttggtttgctggaaatgtcccgtcagcgcctcagcccatcgctgggtgaatccagt
caccacgtctgcccacgctgtagcggtaccggcaccgtacgtgacaatgaatcgctgtca
ctttctattctgcgtttgattgaagaagaagcgctgaaagagaatacccatgaagttcac
gccatcgtaccggtacaaatcgcatcgtacctgttgaacgaaaaacgtgaatcagtaaac
gctattgagaagcgtcaaggtggtgtccgtgccgtgatcgtgccaaacgatcagatgcaa
acaccgcactactctgtcctgcgcgtacgcaaaggcgaagaagtcccgtctctcagctat
ctgttgccacaactgcacgaagcagaaatggcgcaaccgctggaagaggccaccattgaa
cgtaagcgcccggaacaaccagcattggctaccttctctctgccaacagaagtgccacca
gaggaggcccctaccgtagccaaggctaaacctgcggttgcaacacccgccgcggttagt
actgacgtagaacaacctggcttctttagccgtttgttcagtggcttaaaaaatatgttt
ggtgcttccgctgaagcagaagtgcaacccgctgaagttgtaaaaaccgacgctagcgaa
aatcgccgtaatgatcgccgcaatcctcgccgccagaataatggccgtaaagagcgcaat
gatcgtactccacgcgaaggtcgtgataattccagccgcgataacaccaaccgtgataac
accaaccgtgataacaccagtcgtgataacaccaaccgtgataacaccagtcgtgataac
gctaaccgcgatggcgctaatcgtgataattccaatcgcgacaacagtggccgcgataac
gttagtcgtgaaggccgcgaagatcaacgccgcaacaacagacgtccggcccagccaacg
acaacatcgcaagggcaaactgaggttgttgaagccgataaagcgcaacgtgaagaacaa
ccacagcgccgtggtgaccgtcagcgtcgtcgtcaggatgagaagcgtcaggcaccacaa
gaaatcaaagcagatgttgcggaagcccctgttatagaagaggtacaacctgagcaagaa
gaacgccaacaggttatgcaacgtcgtcagcgtcgccagttgaatcagaaagtccgtatt
caatcggcaaatgatgaactgaatacgttggaatctcctgtcagtgcacctgttgcgcag
gtggtggtggctgaagtacaagaagaagtgaagttactgccacaaattactgctcaaact
gatgatgacagtgctaatgaacgtactaccaataatgaaaatggtatgccacgtcgttcc
cgtcgttcaccacgccatctgcgtgttagtggtcaacgccgtcgccgttatcgtgatgaa
cgttacccggcacaatcggccatgcctctggcaggggcttttgcctcaccagaaatggca
tccggtaaagtgtgggttcgttatccagtgacgccagtcgttgaacaggttgtcgttgaa
caggttgtcgttgaacaaatcgccattgaacaaactacaaccgttgagcaaacagccatc
gtcgagcaggtcagtgtagcgaatattgtcactgcgcaattgcctgtagagcaggtgcaa
aacaccgttgcagaacaagaatcgagtgcaactccatctgttatgacaacaccaaccgtt
gcggtaacactggccccacaacacaaaccggggggttcttcatcttcggctgctgcggtt
ccaggccgtgcacctatcgttgctgcagtgcctgtcgttgctgaaacgactgctgctgaa
acggttgttgctaaaactgaagccgctattgatgcggtggctgttgtggaatcgatagct
gctgtggaaactgcaactgtagaaccggttgttacagaagaaccgaatgtcacagaaccg
gccgttgccgagccagcgattgaaactgatcctgtcgaagaaacaacatcagttgtagag
attgctccaaccgttgaatcaacgcctatgatcgaagatacggctgttgtagtcgctgcg
acggtggttgacactacaccagaaactgcgtcaaccgtgcaagatgatattgttgaagag
acagtagttggagagacagcagttgaagcggtaaatatctctgaaactgtggctgaagag
accgcaataacggaacctgctgctgaagccattgctactcagcaaaccactattgcgcag
gagaccattgctgaaccaacggttgaaaccgctattgatgtggttgcggtagtcaaacaa
cccgcggttgcgcatccggaaggggtggtgttcaaacacttcgcttcagcgccaatgacc
aaagcgccagcacctgattacgcccctgaatcaccgaccaaaggtcactgggagcgtcca
acctttgatttctcaggcaaaggttctgctgggggtcatgccgcggctacccaggcaact
gcacccgcgaccaaaccgcaatctgttgagtaa
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