Yersinia pseudotuberculosis IP 32953 (serotype I): YPTB2988
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Entry
YPTB2988 CDS
T00195
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha chain
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
yps
Yersinia pseudotuberculosis IP 32953 (serotype I)
Pathway
yps03030
DNA replication
yps03430
Mismatch repair
yps03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YPTB2988 (dnaE)
03430 Mismatch repair
YPTB2988 (dnaE)
03440 Homologous recombination
YPTB2988 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yps03032
]
YPTB2988 (dnaE)
03400 DNA repair and recombination proteins [BR:
yps03400
]
YPTB2988 (dnaE)
Enzymes [BR:
yps01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
YPTB2988 (dnaE)
DNA replication proteins [BR:
yps03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
YPTB2988 (dnaE)
DNA repair and recombination proteins [BR:
yps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
YPTB2988 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
MutS_II
Motif
Other DBs
NCBI-ProteinID:
CAH22226
UniProt:
Q667K4
LinkDB
All DBs
Position
complement(3523794..3527309)
Genome browser
AA seq
1171 aa
AA seq
DB search
MIQSTHFWYLDMAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCG
LVKFYGSAHGAGIKPIIGADFYVQSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY
GAAGPIIDRDWLIKHKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYLE
LIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPK
RPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGEMSTE
DFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLIVMEFIQ
WSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFCME
KRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDPGM
TLEKAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY
CDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASI
PLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVD
NFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLR
RAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSY
QTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG
EIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKLIMSGAFD
RLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQVV
LDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIAARVMVTK
RGNRIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARE
LMDISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQREDARARLR
FGATWRVTPTDRLLIDLRTLVGNEQVELEFD
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgattcaatccactcatttctggtatctggatatggccgaacctcgttttgtccacctg
cgtgttcatagcgattattccatgatcgatggattagctaagattggacctttggtgaaa
agagctgctgcattaggtatgcctgctctggctattaccgattttactaacctctgtggc
ctggtgaaattctacggcagcgcgcatggtgcggggattaaacccatcatcggtgctgac
ttctacgtacaaagtgaaatactgggtgatgaattagctcacctcacggttttggctcgc
aataatgaaggctatcaaaatctgactttattgatctcagaagcctaccaacggggttat
ggcgctgcgggtcctatcattgatcgcgattggctgatcaaacataaagaaggactcatt
ctgctgtctggtggccgaatgggggatgtgggcaaatttctgctacggggtaaccaggtt
caggttgatcaatgtctcgccttttatcaggaacactttccagactgctattacctcgaa
cttattcgaaccgggcgtccagacgaagaaaactatcttcatgctgccgtggcattggcc
actgagcgtggtttacctgtcgttgcgaccaatgatgtgcgttttattgatgaatcggat
tttgatgcccatgaaatccgtgtcgctatccatgatggttttacattggtcgatcctaaa
cggccgaagaattacagccctcagcagtttatgcgcgatgaagaacagatgtgtgagctg
ttcgctgatattccagaagcgttgatcaacagcgttgagatagccaaacgctgtaatgtc
actattcgccttggggaatatttcttaccgcagttccccacaggggagatgagtacagaa
gattttctggtagaaaaagccaaacaaggtttggaagaacgtttggaatttctgtttccg
gaccctgaggttaggctgcaaaaacggccagaatatgatgaacgtctggatatcgagctc
aaagttatcaaccaaatgggcttccctggttacttcctgattgtaatggagtttatccag
tggtcgaaagataacggcgtaccggtggggccggggcgtggctctggtgcaggctcattg
gtggcttatgccctgaaaattactgatattgacccactggaatttgatctactgttcgag
cgcttccttaatccggaacgtgtatcgatgcctgacttcgacgttgacttctgtatggag
aaacgtgatctggtgatcgaacacgtggcggaaatgtatggccgcgatgcggtttcccag
ataattaccttcggtaccatggcggctaaagcggtcatccgcgatgtcggccgtgtatta
ggccatccctatggctttgttgatcggatctcaaaattaatcccactcgatccggggatg
acactggaaaaagcgtttgcagcggagccacagctagctgaaatttatgaagctgatgaa
gaggtcagggcgctaattgatatggcgcgtaagctggaaggagtaacgcgaaacgccggg
aaacatgctggaggcgtggttattgcccccactaagattaccgattttgccccactctat
tgtgatgcggaaggcaataacccagttacgcagtttgataaaaatgatgtggaatatgct
gggctggtgaagtttgacttcctcggtctacgtacactaaccatcattaattgggcgttg
gagatgattaacgcccggcgcgctaaaactggattggaacccattgatatcgcctctatt
ccgctggaggataaaaaaagcttcgatatgctgcaacgttcggaaacgacagcagtattc
cagctggaatccagagggatgaaagacttgatcaagcgcctgaagcccgactgcttcgag
gacatgatcgccttagtggcgttatttcgtcccggtccgttacaatcagggatggttgat
aactttattgaccgtaaacacggccgggaagcgatatcttacccagatattgagtggcaa
catgaatccttgaaacctgtgcttgagccgacctacggcattatcttgtatcaggaacag
gtcatgcaaattgcgcaggttctgtccggctactcactgggtggtgcggacatgttgcgt
cgtgccatgggtaagaaaaaccctgctgagatggctaagcagcgttctgtatttgaagat
ggtgcgaaaaatcagggtattgatggtgagctggcgattaaaatctttgacctggttgag
aaatttgcaggttacggttttaacaaatctcactcggcagcttatgcattagtctcctat
caaacgttgtggttaaaagcccattatccggctgaatttatggctgcagtaatgaccgct
gatatggataatacggacaaagtggtcggcttggtcgatgaatgctggcgtatggggctg
aaaattctgccccctgacatcaacagcggtttgtaccatttccatgtaaacgatgatggc
gaaattgtttatggtattggtgccattaaaggtgtaggtgaggggccgatagaagccatt
ctggaggcgcgtaaagaggggggctattttaaagagttatttgacctatgcgcccgtgtc
gataccaaaaagcttaacaagcgtattttagaaaaactgatcatgtccggtgcatttgac
cgtttggggccacaccgtgcagcattgatgagttctctcggggatgcgcttaaagccgca
gatcaacatgctaaagccgaagcaattggtcaggtagatatgtttggtgtattagccgac
gcgcctgagcaggttgagcaatcctatgccaatgtgccgccatggcaggagcaggttgtt
ttagatggtgaacgggaaacgctggggctgtatttaactggccatccgatcactcagtac
ctcaaggaaatcgaacgctatgccggtgggatgcgtttgaaggatatgcatccgacggat
cggggcaaaatgaccaccgcagtggggttggtgatcgcggcaagggttatggtcacaaaa
cgtggtaatcgcattggtatttgtacgctagatgaccgctctggtcgtctggaggtgatg
ttattcaccgatgcattggaaaaatatcagcatttattggaaaaagaccgtatcctgata
gccaccggacaggtcagctttgatgactttagtggtgggcttaaaatgaccgcccgtgag
ttaatggacatcagtgaagctcgtgaaaaatatgcccgtgggcttgctatctcgctgact
gacaggcaaattgatgaccagcttttgaaccgtctccgtcagtcgttggaaccccatcga
gcggggacgatcccagtacatctttattaccaacgggaagatgctcgcgcccggctgcgg
tttggagccacatggcgcgtgacgcccaccgatcgcttattaatcgatttgcgaacgttg
gtaggtaatgagcaagtggaactggaatttgactaa
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