Yersinia pseudotuberculosis IP 32953 (serotype I): YPTB3949
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Entry
YPTB3949 CDS
T00195
Symbol
thdF
Name
(GenBank) putative thiophene and furan oxidation protein
KO
K03650
tRNA modification GTPase [EC:3.6.-.-]
Organism
yps
Yersinia pseudotuberculosis IP 32953 (serotype I)
Brite
KEGG Orthology (KO) [BR:
yps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
yps03016
]
YPTB3949 (thdF)
Transfer RNA biogenesis [BR:
yps03016
]
Eukaryotic type
tRNA modification factors
Other tRNA modification factors
YPTB3949 (thdF)
Prokaryotic type
Methyltransferases
YPTB3949 (thdF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MnmE_helical
TrmE_N
MMR_HSR1
FeoB_N
Dynamin_N
RsgA_GTPase
AIG1
Ras
ABC_tran
Roc
AAA_28
Arf
SRPRB
Gtr1_RagA
Motif
Other DBs
NCBI-ProteinID:
CAH23187
UniProt:
Q663S6
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All DBs
Position
4713888..4715252
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AA seq
454 aa
AA seq
DB search
MSTTDTIVAQATPPGRGGVGILRVSGRAASEVAHAVLGKLPKPRYADYLPFKDVDGSTLD
QGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDK
LDLAQAEAIADLIDASSEQAARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAIDFPDEE
IDFLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRE
AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREANDEVERIGIERAWNEIEQADRVL
FMVDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGLTKVNGHSLIRLSAR
TGEGIDLLRDHLKQSMGFTSNTEGGFLARRRHLQALETAARHLVQGHEQLVSAYAGELLA
EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccactgatactatcgtggcccaagcaacgccccctggtcgtggcggtgtcggc
attctacgtgtttcaggtcgtgctgcctcagaggttgcacacgccgttctgggtaaatta
cctaagccacgttatgccgattatctgccgtttaaagacgtggatggcagcacgctggat
caaggtatcgctctctatttccccggtccaaattctttcactggcgaagatgtattagag
ctgcaaggccatggtgggccggtgatactggatttactgttaaaacgcattctagccctg
ccagggctgcgtattgcccgccctggggagttttccgagcgtgccttcctcaacgacaag
ctggacttagcacaggctgaagccattgccgacctgatcgacgccagttcagagcaagca
gcacgttcggcagtaaactcattgcaaggcgcattttcagcgcgtatccatcaattggtg
gaagcacttactcacctgagaatctacgttgaagctgccattgactttccagatgaggaa
attgacttcctttctgatggcaaaatcgaaggccaactgaatggtgtcatggccgatctg
gaacaggtacgtactgaggctagacaaggcagcttactacgtgaagggatgaaagtggtg
attgctggccggccaaacgcagggaaatccagtttactcaatgcgttagctggccgtgaa
gcggcgattgtaacggatatcgcgggcaccacccgtgatgttttacgggaacacattcat
attgatgggatgcctttacatatcattgataccgcagggttgcgggaagccaatgacgaa
gttgagcgcattggcattgaacgcgcgtggaacgagatagaacaggctgatcgtgtattg
tttatggtggatggcaccaccaccgatgccaccgaacctgcggctatctggccagagttt
atggcacgcttaccggcaacactgcccatcactgtggtacgcaataaagcggatataaca
ggtgaaacgctggggctgaccaaagtgaatggtcactcacttattcgtctgtcggcacgc
actggagaaggtattgacctgctgcgtgaccatttaaaacaaagtatgggctttaccagc
aacactgaaggcggtttcctggctcgacgtcgccatttacaggcactggagactgccgcc
aggcatttggtacaaggccatgagcagttagtgagcgcttacgctggtgaattactggca
gaagaactgcgtttagcacaacaatcattgagtgaaattaccggtgaatttagttctgat
gacttactggggcggattttttccagtttctgtatcggaaaatga
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