Yersinia pestis A1122: A1122_06675
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Entry
A1122_06675 CDS
T01831
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ypt
Yersinia pestis A1122
Pathway
ypt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ypt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A1122_06675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ypt03019
]
A1122_06675
03400 DNA repair and recombination proteins [BR:
ypt03400
]
A1122_06675
Enzymes [BR:
ypt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A1122_06675
Messenger RNA biogenesis [BR:
ypt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A1122_06675
DNA repair and recombination proteins [BR:
ypt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A1122_06675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Peptidase_S66
zf-CXXC
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AEL71990
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All DBs
Position
1459350..1461182
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AA seq
610 aa
AA seq
DB search
MSTAAVINRELLAVQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIP
ALVTDGLTLVVSPLISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQIKLLY
IAPERLVMESFLDQLYQWRPALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIAL
TATADEATRGDIVRLLNLDQPLIQISSFDRPNIRYTLVEKFKPLDQLWRFVQDQRGKSGI
IYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAVLLYDPADMAWLRRCLEEKPAGAQ
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGKQQPCGNCDICLDPPKRYDGLADAQKAL
SCVYRVGQRFGLGYIVEVLRGANNQRIREMGHDKLSVYGIGREQTHEHWVSVLRQLIHLG
LLSQNIAQFSALQLTEAARPVLRAELPLQLAVPRIQSLKVRSSANQKSYGGNYDRKLFAK
LRKLRKSIADEGNIPPYVVFNDATLLEMAEQMPITASELLSVNGVGQRKLERFGAPFMAL
IRDHVDNNDD
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgaccgcagcagtgataaacagggaattactggcagtgcaggtattgcgagatact
tttggttatcagcaatttcggccagggcagcaggagatcatcaacgcgacattgtcaggc
caggattgtctggttgtgatgccaactggcggcggtaagtccttgtgttatcagatccct
gccttggtgaccgatgggctgacattggtggtttcaccgcttatctctctgatgaaagat
caggttgaccaactgttggcctatggcgtgggcgcgggttgtctaaactcatcgcagacc
cgtgaacagcaactggccgttatggatggttgccgcagtgggcagattaaattgctgtat
atcgcgccagaacggttggtgatggagagttttcttgatcaactgtatcaatggcgaccc
gccttgctggcagtggatgaggctcactgtatttcccaatgggggcatgatttccgcccg
gaataccgtgctcttggtcagttaaagcagcgtttccctgatctaccggttattgcattg
accgctacggctgatgaagcgacgcgtggcgatattgtgcgcctgttgaatctggatcaa
cctctgattcagatcagtagttttgatcgcccgaatatccgctataccttagttgagaag
tttaaacctctcgatcaactgtggcgttttgtacaagaccagcgcggcaagagcggcatt
atttactgtaatagccgagcgaaagtggaagatacgaccgcccgtttgcaaagccgtggc
ttgagtgttgccgcctatcacgccgggctggataacgagcgccgtgctcaggtgcaagag
gctttccagcgcgatgacttacaagtggtggtcgccaccgtagcgtttggaatggggatt
aacaaaccgaacgtccgctttgtcgtgcattttgatatcccacgcaccatcgaatcctac
tatcaggaaacggggcgcgccgggcgtgatggcttaccggctgaggccgtgttgttgtac
gatccggcagatatggcgtggttacgccgttgtcttgaagagaaacctgcgggtgctcag
caagatatcgaacggcataaactcaatgcgatgggggcatttgccgaagcgcaaacctgt
cgccgtttggtgctgctcaactattttggtgaaggtaaacagcagccatgcggtaactgc
gatatttgtctggatccgccaaagcgctacgatggtctggcagatgcgcaaaaggcgctc
tcttgcgtctatcgggtagggcaacgctttggcttagggtacatcgttgaggtgctgcgt
ggggcgaataaccagcgtattcgtgagatgggccatgacaagctttcggtgtacggcatt
ggccgtgagcaaacccatgaacactgggtcagcgtcttgcgccagttgatccatttgggg
ctgctcagccagaatattgcccagttctctgccttgcaactgactgaagcggcgcgcccg
gtcttacgcgcagagctgccattacaactggcggtaccgcgtattcagagcctgaaagtg
cgtagcagtgccaatcagaaatcctatggtggcaattatgatcgcaagttgttcgctaag
ctgcgcaaactgcgtaaatcaattgctgatgaaggcaatatcccgccttatgtggtgttt
aacgatgcgaccttgctggagatggctgagcagatgccgattactgccagcgagctattg
agcgtgaatggtgtcggtcagcgtaaactagaacgttttggtgcaccatttatggccctg
atccgtgatcatgtggataacaacgatgactaa
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