Yersinia pestis A1122: A1122_14535
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Entry
A1122_14535 CDS
T01831
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ypt
Yersinia pestis A1122
Brite
KEGG Orthology (KO) [BR:
ypt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ypt03019
]
A1122_14535
Enzymes [BR:
ypt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
A1122_14535
Messenger RNA biogenesis [BR:
ypt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
A1122_14535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
NACHT
T2SSE
nSTAND3
PhoH
AAA_25
NTPase_1
ResIII
AAA_16
AAA_23
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
AEL73534
LinkDB
All DBs
Position
3149869..3153711
Genome browser
AA seq
1280 aa
AA seq
DB search
MLRDQQRIQRRLHSARKINNPDAIQAITHEIEAEIAIAMQRVTRRRAACPAISYPDNLPV
SQKKQDIYNAIRDHQVIIVAGETGSGKTTQLPKICLELGRGVKGVIGHTQPRRLAARTVA
NRIADELDTSLGGCVGYKVRFNDQVGENTLVKLMTDGILLAEIQQDRLLMQYDTLIIDEA
HERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSQHFNNAPIIEVSGRTYPVEVR
YRPIVDDADDVDRDQLQAIFDAVDELGRESAGDILIFMSGEREIRDTADALIKQNLPHTE
VLPLYARLSNSEQNRVFQSHHGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSFRTK
VQRLPIEPISQASANQRKGRCGRVSDGICIRLYSEQDFLSRPEFTDPEILRTNLASVILQ
MTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAIQTASNGHQQLTPLGRQLAQLPVDP
RLARMVLQAQKSGCVRELMIITSALSIQDPRERPVDKQQASDEKHRRFADKDSDFLAFVN
LWDYLKEQQKALSSAQFRKLCRSDYLNYLRVREWQDIYTQLRQVVKELGIPVNSVAADYR
SVHTAILTGLLSHIGQKDVEKQEFTGARNARFAIFPGSGLFKKPPKWVMVAELVETSRLW
GRIAARIEPEWIEPLAQHLVKHHYSDPHWEKAQGAVMASEKVTLFGLPIVTERKINYGPI
DPLLCRELFIRHGLVEGDWQTRHAFFRMNLKLLAEVEELEHKSRRRDILVDDETLFNFYD
QRIGRDVISALHFDSWWKQASQTKPELLNFEKTMLIKEGANKVNPLDYPNFWYQGELKLR
LFYQFEPGTDADGVTVHIPLPILNQIHEQGFDWQIPGIRRELVIALIKSLPKPVRRNFVP
APNYADAFLARVTPLETGLLEALERELRRMTGVTVSRDSWQLDQVPDHLKITFRVLDDKN
RILREGKDLAALKLQLQEKVQETLSAVADDGIEQNNLHIWSFGDLPICYEQRRGGYEVKA
YPALVDEKDSVAIRLFDTESQQQQAMWQGTRRLLLLNIPSPIKYLHEKLPNKSKLGLYFN
TYGNVMDLIDDCIACGVDKLVAQHGGPVWQEADFARLQEKVRAELNDTVVDIAKQVEQIL
TLVFSINKRLKGRIDISLVLALSDIKAQLAGLIYRGFVTSNGWKRLPDTLRYLKAIERRL
EKLAVDPHRDRAQMLRIEHVQQVWQQWLNKLPPKRQQDEEVKEVRWMIEELRVSLFAQQL
GTPYPVSDKRILQTIEQLSV
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgctccgtgaccaacagcgcattcagcgtcggctacatagcgcacgaaaaatcaataac
cctgacgccatacaggcgattactcacgaaattgaagccgaaatcgcgatagcaatgcag
cgagtaacccgccgtcgggcggcttgtccggcgatcagttatccagataatctgcccgtc
agccagaagaaacaggatatttataacgctatccgtgaccatcaggtgatcattgtcgcc
ggtgagactgggtcgggtaaaacgacacagttgccgaaaatctgcctggaactggggcgg
ggggtgaaaggcgttatcggccacactcagccacgccgtttggccgcccggacggtggct
aaccgcattgccgatgagctggatacttcgcttggcggctgtgttggttacaaagttcgt
tttaacgatcaggtcggtgaaaatacactggtcaaattaatgacggatggcattctgctg
gctgaaattcagcaagatcgcctgctgatgcaatatgacacgttgatcattgatgaggcc
cacgaacgtagccttaacattgattttatcttgggctatttacgtgagttattacctaaa
cgccctgatctgaaagtgatcattacgtcagcgactattgacccgcaacgcttctcacaa
catttcaataacgccccaattattgaggtctctggccgtacctacccggtggaggtgcgc
taccggccgattgtggatgatgccgatgatgttgatcgggaccaattgcaggccattttt
gatgcagtcgatgagttgggccgtgaaagcgccggggatatcttaatctttatgagtggt
gagcgcgaaatccgtgacacagcggatgcgttgataaagcaaaatttgccacacaccgaa
gtgctaccgctgtatgcccgcttatcaaacagtgagcagaaccgggtgtttcagtcacat
catgggcggcgaattgtgttggcaaccaacgtggcagaaacgtcactcacggtgccgggt
atcaaatatgttatcgatcccggcacagcacgtatcagccgttacagtttccgtaccaag
gtccagcggttaccgattgagcctatttctcaggcatcggctaatcagcgtaaagggcgg
tgtggccgtgtctctgacggtatttgtattcgtctttattccgagcaagattttctctcc
cgccctgagttcacggatccagaaatcctacggaccaatctggcttcggtgatcttgcaa
atgacctctctggggttaggggatatcgctgcatttccctttgttgaagcaccggataaa
cgcaatatccaagacggtgtaaggttactggaggaactgggggccattcagaccgccagt
aacgggcatcagcaattgaccccattgggccgccagttagcccaacttcctgtcgatcca
cgcttggccagaatggtattgcaagcgcagaaaagtggctgcgtacgtgaattaatgatt
atcacctcggcgttatctattcaggatccgcgtgagcgtccggtagataaacagcaggcc
tctgatgaaaaacaccgccgttttgcggataaagattccgattttctcgcctttgttaat
ctgtgggattatctcaaagaacaacaaaaagcgttgtcatcagcacaatttcgtaagctt
tgccgcagcgattacctgaattacctacgggtgcgtgaatggcaggatatttacactcag
ttgcggcaggtcgttaaagagttagggatacccgtcaacagtgttgccgcagactaccgc
agtgtacataccgcgatactgaccggtttactttctcacattgggcagaaagatgttgag
aagcaagagtttaccggtgctcgtaacgcccgctttgctattttccccggctccggctta
ttcaaaaagccccccaagtgggtcatggtggctgaattggtcgagaccagccgtttatgg
gggcgcattgctgcacgtattgaacccgaatggattgagcctttagcccagcacctggtg
aaacaccattacagcgatccacattgggagaaagctcagggcgcggtaatggccagcgag
aaagtgaccttattcggcttaccgattgttacggagcgtaagatcaattacggcccgatc
gatccactgctctgccgtgagttgtttattcgccacgggttggttgaaggtgactggcag
acgcggcacgcgttcttccgaatgaatcttaagctattggctgaagtggaagagttggaa
cacaaatcccgtcggcgggatattctggtcgatgacgagacactctttaacttttatgat
caaagaattggtcgtgatgttatctctgccctccattttgatagctggtggaagcaagcg
agccagacgaaacccgagctgctgaactttgaaaaaaccatgcttatcaaagagggtgcg
aacaaagtaaacccgcttgattatccgaatttttggtatcaaggggagctaaaactccgt
ctgttttatcagtttgaacccggcaccgatgccgatggtgtcacagtacacattccatta
cctattctgaaccagatccatgagcaggggtttgactggcagatcccagggattcgccgc
gaactggtgatagcactgattaaatcattgcccaaaccggtacggcgtaattttgttccg
gcacctaattatgccgatgcttttctggcacgggtaacaccactcgaaacgggtttattg
gaggctttggagcgtgaattacgccgcatgactggcgtgacggtgtcacgtgatagttgg
cagttagatcaggtgcctgaccatctgaaaataacgtttcgtgtgctggacgataaaaac
cgtattttgcgagaaggcaaagatcttgccgccctaaagttacagttgcaagagaaagta
caggaaacactttctgccgtcgcggatgatggtattgaacaaaataacttacatatctgg
agttttggcgatctccctatctgctatgagcaacggcgcggtggctatgaagtcaaagcc
tatccagcgttagtggatgaaaaagacagtgttgccatccgtttgttcgatacagaatcg
caacaacaacaggctatgtggcagggtacccggcgtttattgctactcaatattccttcg
ccgattaagtacttacatgagaaattgccgaataaatccaaactgggtctctatttcaat
acgtatggcaacgtaatggatctgattgatgactgcatcgcctgtggcgtcgataaactg
gtggcacagcatggtggcccggtctggcaggaggctgattttgctcgtttacaagaaaaa
gtccgtgcggaactgaatgacaccgtggtggatattgccaagcaggttgagcagatcctc
acgctggtgttcagtattaataagcggttgaaaggccggatcgatatttcactggtattg
gcgctttctgatattaaagctcagcttgctggccttatctatcgtggatttgtcacgagt
aatggctggaagcgtttgcctgatactttacgttatttaaaggctattgagcggcgctta
gaaaaactggcggttgatcctcatcgcgatagggcgcaaatgctgcgaattgagcatgtt
cagcaagtatggcaacagtggttgaataaattaccgcctaaacgtcagcaagatgaagag
gttaaagaagtccgttggatgattgaagaactgcgtgtcagtttatttgctcaacaactg
ggcaccccttatccggtgtctgacaaacgtatcttacaaacgatcgaacagctttctgtc
tga
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