Yersinia pestis A1122: A1122_18110
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Entry
A1122_18110 CDS
T01831
Symbol
sbcB
Name
(GenBank) exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
ypt
Yersinia pestis A1122
Pathway
ypt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ypt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
A1122_18110 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ypt03400
]
A1122_18110 (sbcB)
Enzymes [BR:
ypt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
A1122_18110 (sbcB)
DNA repair and recombination proteins [BR:
ypt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
A1122_18110 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
A1122_18110 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A1122_18110 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
YkoP
Motif
Other DBs
NCBI-ProteinID:
AEL74239
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All DBs
Position
3883744..3885174
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AA seq
476 aa
AA seq
DB search
MSDKNKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQP
EAVMITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFY
DPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAH
DAMSDVYATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARG
NTSWVAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKL
VHINKCPVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVT
DDVDTQLYNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLN
DSEQQRWLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLVS
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtcagataaaaataagcaaccaacattttacgtccacgattatgaaaccttcggccag
cggccagccttggatagacctgcgcaatttgccggggtacgtaccgatctggatttcaat
ctcgtcgaagagccattggtcatttactgcaagcccgcagatgattatctgccacagccc
gaagcggtgatgataaccggtattaccccccaacatgctttagccaacggggtcaatgaa
gctgagttttcccgccaaatacaccaggccttttcggtacccggcacctgtatcctcggc
tacaacaatattcgttttgatgatgaagtcagtcgcaacattttctatcgtaatttttat
gatccttatgcctacagttggcaggggggaaattcccgttgggatctgttggatgtgatg
cgcgcctgctatgccctgcgcccagaaggtattgtttggcccgaaaatgatgatggcctg
cccagctttaaactggaacatttgaccaaagccaatggcgtcgaacatttacaggcacat
gatgcgatgtccgatgtctacgccaccattgcaatggcaaaattggtgaaacaggcccaa
ccccgtctgtttgattatctgtatcagcaccgcagtaagcataagatcaatgcgttgatt
gatatcgcggagatgacaccactggttcatgtgtctggcatgtttggtgccgcacggggc
aacaccagttgggtggcaccgctggcctggcaccccgagaataaaaatgcggtaattatg
tgtgatctggccggggatatgtccccattactggagttggacagcgatacattgcgcgaa
cgtctgtatacccgccgtgacaagctccaagcccaagagtcggcaatccctatcaaactg
gtacatatcaataaatgtccggtattggctcccgcgaaaaccctgctgcccgagaatgct
gatcgcttggggattgatcgccagcgttgtttgcaaaatctacaactgctgcggcaaaac
ccacaggtgcgtgaaaaagtggtcgcgctgtttgcacaagctgagccattcgcggttacc
gatgatgtggatacacagttgtataacggctttttcagtgatgctgatcgcgccaccata
aagattatccagcaaactgagtcacaaaatctgccagcactggatttgacatttcaggac
ccacggttggaggccctgttattccgcttccgcgcccgtaactacccgaataccttgaat
gacagtgaacaacagcgttggttacagcatcgccgtgaagcgcttagccctgaacgggta
caagattatgttttgcaactggaacaattttataaccagtatgaagacgataaagagaaa
cttgcgctgctaaaagcgttgtttgaatatgccaagggattagtgagttaa
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