Yersinia pseudotuberculosis MD67: BZ21_159
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Entry
BZ21_159 CDS
T03677
Name
(GenBank) exonuclease SbcC family protein
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ypu
Yersinia pseudotuberculosis MD67
Brite
KEGG Orthology (KO) [BR:
ypu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ypu03400
]
BZ21_159
DNA repair and recombination proteins [BR:
ypu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BZ21_159
Archaeal homologous recombinant proteins
BZ21_159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
AAA_21
cobW
ABC_tran
COG6_N
nSTAND3
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AJJ02476
LinkDB
All DBs
Position
complement(172451..176140)
Genome browser
AA seq
1229 aa
AA seq
DB search
MKILSLRLKNINSLQGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHQTPR
LIVTPSQNELMTRHTAESLAEVEFDVKGIRYRAFWSQRRARNSPDGNLQAPKVELALCEN
GKILADKVRDKLDMIAAITGLDFGRFTKSMMLSQGQFAAFLNADANDRAELLEELTGTDI
YGRLSERVFEKHKQAKIDLDALHQRASGIELLNEEQRLALAQQIDALSQQEQQLSKEQLV
TQNQINWLTGWQQQQQHVQQYQQQQVLVEQEYQQALPGLQRLARSEPAEKLRPLQRERDR
SQKDLQQTQQRITALAQQQQQYLAQLTPLTQAVEQATAARQQQQLNQHEQETLIEQRIVP
LDNLITQQQQTLSQLAGQIQQLRAKEQQNSQQLALNEQKLLQTHQRLQQLADYANLHAHH
QHWEKHLPLWHEQFRQLQLQQQQSAQSEQQLHQQTTLLATLQQQATTLSAQEKQQQVALA
EARAQASYLQQKLLVLEQQQPSAQLRQQLNEFNEQRQICQQLAALSPLAQQIQALYDKQQ
QQFTAQQQQLKQLEQQLTEKRQLYQQQKQHLVDLEALLEREKQLVTLEAERAKLQPGDAC
PLCGAVEHPAITAYQAVKPSETAVRVAKLRLQVEQLYTEGTELRTQVASMQQHQQRIEQE
LQDHRQQLAAYQQRWQTLAQPLSLAFTLNEPDALALWLEQHEQQEQACQLKLVEYERLTQ
QYQQAKDILTQLEQRQQEHQQQLALITERQKNAQQTYQQLQSQYQHQQEALIAQQQVLNH
TLTELSLSVPDADQQQNWLAQREEECQRWQQHQQEQQRLTIEQKTLETRIENERRHLQEC
IDQLSALSQQRQQAETLLQQQIQQRRALFGEDIVAEVRQRLRLQQQQAELAQQNAEKALQ
QVQSQLNRLSGELTGLEQQCQQYQQRATTTQAELQQALSTSEFADETALTAALLSEEERQ
HLQQLQQQLNERRQQAQIRLQQAREILDQHLQLCPQGVDKSSELTLLQQQSEQLLAQLKT
TTLRQGELRNQLESDTTRRHNQRTLFEQIERSQQQYDDWSYLNQLIGSKEGDKFRKFAQG
LTLDHLVYLANNQLSRLHGRYLLQRKTTDALELQVVDTWQADAIRDTRTLSGGESFLVSL
ALALALSDLVSHKTSIDSLFLDEGFGTLDAETLDTALDALDSLNASGKTIGVISHVEAMK
DRIPVQIKVKKVNGLGVSRLDNAFRVNQD
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattttgagcctacgtctgaaaaacattaactcattacagggcgaatggaagata
gatttcactgccgaaccttttgccagtaacggcttatttgctatcaccggcccaactggc
gcgggaaaaaccacgctgttagatgctatctgtctggcgttgtaccaccaaacccctcgc
ctcatcgtaacccccagccagaatgaactgatgacgcgccatactgcagaatcactggca
gaagttgaatttgacgtgaaaggtatccgttatcgcgccttttggagccagcgccgtgcc
agaaacagcccagatggcaatctgcaagcccccaaagtagaactggccttatgcgaaaac
ggcaaaatcttggccgataaggtccgcgataaattagatatgatcgcggcaatcaccggt
ctggactttggccgttttaccaagtccatgatgctgtcacaggggcaatttgccgccttc
ctcaatgcagatgccaatgatcgcgctgagttactggaagaattgacgggaaccgacatc
tacggacgtctatctgaacgcgtatttgaaaaacataaacaagccaagatcgatctggat
gcattgcaccaacgtgccagcggcattgaactgttaaatgaagaacaacgcctggccctg
gcacagcaaattgatgcactgagtcaacaagagcagcagctcagtaaagaacaactcgtc
acgcaaaaccaaataaactggctaacaggttggcagcagcagcaacaacacgtacagcaa
tatcagcagcaacaggtgctcgttgagcaagagtatcaacaggcactacccggcctacaa
cgtttagcgcgtagcgaaccggcagaaaaattgcgcccgttgcaacgagaacgtgaccgt
agccaaaaagatttacaacaaacacagcaacgcatcaccgcattggcacaacaacagcag
caatatctggcacagctcacaccactgactcaggcagtagagcaagccactgcggcacgc
caacagcaacagcttaatcaacatgagcaagaaacactcatcgaacaacggatcgtgccg
ctggataaccttatcacccagcagcagcagacattgtcgcaacttgcagggcaaattcag
caattacgcgctaaagagcagcaaaacagccaacaacttgcgctgaatgagcaaaaacta
ttgcagacccatcaacgcctgcaacagctagcagactatgccaatttacatgcccatcat
cagcactgggaaaaacatcttcccttatggcatgagcagttccgccaattacaactacag
caacaacaatcagctcaaagtgagcaacaactacaccaacaaacaaccttactcgccacg
ctgcaacagcaggctacaacactaagtgcgcaagagaaacaacaacaagtggccttagcg
gaggctcgcgcacaggcaagctatcttcagcagaaattattagtccttgaacaacagcaa
ccttcagcacagttgcgccagcaactaaacgagttcaatgagcaacgtcagatatgccaa
caactggcggctttatcgcctttagcacaacaaatacaagcactctatgataagcagcag
caacaatttacggctcagcagcaacagcttaaacagttagagcaacagttaaccgaaaaa
cgccagttatatcagcagcagaaacaacatctggttgatttagaagccttactggaacgc
gaaaaacagcttgtcacactggaagcagaaagagccaaactgcaaccaggagatgcctgc
ccgctatgtggtgctgtggagcacccggcgattactgcgtaccaagcagtgaaaccctca
gaaacagccgtgcgagttgcaaaactgcgcctacaggtcgaacagctttacactgaaggc
actgagttgcgtacccaagttgcaagcatgcaacaacatcagcagcgtatagagcaagag
ttacaagaccatcgccaacagttagctgcatatcagcaacgttggcaaacactggcacaa
ccgttatcactggccttcaccttgaatgaacctgacgcattagccctgtggctagagcaa
catgagcagcaagaacaggcgtgtcaactaaagctggtggagtatgagcgtctgactcag
cagtatcagcaggccaaagatatcctgacccagttggaacaacggcagcaagaacatcaa
caacagttggcactgatcactgaacgccaaaaaaatgctcaacaaacctaccaacagctg
caatcgcaatatcagcaccagcaagaagcacttatagctcagcagcaagtgttaaaccat
acgctgactgaattgtccttatcagtacccgatgccgatcaacaacagaattggctagca
cagcgggaagaggaatgtcagcgctggcaacaacatcagcaagagcaacagcggctcact
attgaacaaaaaacgctggaaacacgtattgagaatgaacggcgtcatttacaggagtgt
attgaccaattatcggcgctaagtcaacaacgccagcaagctgaaacgctattacagcag
caaatccagcagcgccgggcactgtttggtgaagatatcgttgccgaagtccgccagcga
ttacgcttacagcagcaacaggcagagcttgcccagcaaaacgcagaaaaagccctacaa
caggttcaatcccaactgaataggctatcaggtgaactgaccgggctggagcaacaatgc
caacagtatcagcaacgtgctaccaccacacaggctgaattgcaacaagcactgtccacc
agcgaatttgctgatgaaacggcattaaccgcagccctgttaagtgaggaagaaaggcag
catctacaacaactgcaacagcaattaaatgagcgacggcaacaagctcagatccgcctg
caacaagccagggagatattggatcaacatttacagctttgtccccaaggtgtcgataag
tcctctgaattaaccttattacaacaacagtcagaacagctattggcacaactgaaaacc
acaacgttacggcaaggcgaactacgcaatcagttagaaagcgacaccactcgacgtcat
aatcaacgtacgctatttgaacaaattgagcgtagtcagcagcaatatgatgactggagt
tacctcaatcaattaattggctccaaagaaggcgataaattccgtaaatttgcgcaaggt
ctcacactcgatcatctggtttatctggccaataaccaacttagtcgtttacatgggcgc
tatctattacaacgtaagactacagatgcattggaattacaggtggtagatacctggcaa
gcggatgccatacgcgatactcgcaccctgtcaggaggagagagttttctggtgagtctg
gcgctagcattagcactgtctgatttagtcagccataaaaccagtattgactcactgttt
cttgatgaaggcttcggtacgttggatgctgaaacattggataccgcactggatgccttg
gatagcctgaatgcttccggcaaaactattggggtgataagccatgtagaggcaatgaaa
gatcggatcccggtgcagataaaagtgaaaaaagttaacgggttaggcgtcagccgtttg
gataatgccttccgagtcaatcaagactga
DBGET
integrated database retrieval system
