KEGG   Yersinia pestis Shasta: BZ15_3980
Entry
BZ15_3980         CDS       T03718                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
ypv  Yersinia pestis Shasta
Pathway
ypv03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ypv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BZ15_3980 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ypv03021]
    BZ15_3980 (rpoC)
   03400 DNA repair and recombination proteins [BR:ypv03400]
    BZ15_3980 (rpoC)
Enzymes [BR:ypv01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BZ15_3980 (rpoC)
Transcription machinery [BR:ypv03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BZ15_3980 (rpoC)
DNA repair and recombination proteins [BR:ypv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BZ15_3980 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: AJJ51155
UniProt: A0A3G5L227
LinkDB
Position
4388767..4392987
AA seq 1406 aa
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEILREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEEIRNTEGESITRTSIIDTTVGRAILWMIVPQGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEAKAGIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMDNLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGIVMTPVIEGGDVKEPLRDRVL
GRVTAEEVIKPGSADILVPRNTLLDEKWCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
SNVKFVTNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGAEVQGGETVANW
DPHIMPVVTEVSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGNDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVDAGSTDFLEGEQAEMSRVKIANRKLAAEGKIEATFTRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRKAQGEAPV
VPQVSADEATANLAELLNAGFGNNKG
NT seq 4221 nt   +upstreamnt  +downstreamnt
gtgaaagacttattaaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcatcgccagacatgatccgttcatggtcattcggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
atctttggcccagtaaaagattacgaatgcctgtgcggtaagtacaagcgtttaaaacac
cgtggtgttatttgtgagaaatgcggcgttgaagtgactcaaactaaagtgcgccgtgag
cgtatgggtcacatcgaactggcttctccaactgcgcacatctggttcctgaaatcgctg
ccatctcgtatcggtttgctgctggatatgccattacgtgacatcgaacgtgtactgtac
ttcgaatcctatgtggttattgaaggcggtatgaccaacctggaacgtcgccagattctg
actgaagagcagtatctggatgcgttggaagagtttggtgatgagttcgacgcgaaaatg
ggcgccgaggctattcaggccctgttgaaaaacatggatctggaagctgagtgcgagatc
ctgcgtgaagaattgaacgaaacaaattctgaaaccaagcgtaagaaactgaccaagcgt
atcaagttgctggaagcgttcgtacagtctggcaacaagccagagtggatgatcctgacc
gtgctgcctgtgttgccgccagatctgcgtccattggttccgttggatggtggtcgcttt
gcgacttccgatctgaacgatttgtatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggacttggcggcaccggacatcatcgtacgtaacgaaaagcgtatgctgcaa
gaagcagtagatgcattgctggataacggccgtcgcggtcgtgcgattaccggctctaac
aagcgtccgttgaagtcactggctgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctgggtaaacgtgttgactactcaggtcgttcggttatcaccgttggtccatac
ctgcgtctgcatcagtgcggtctgcctaagaaaatggctcttgagctgtttaaaccgttc
atctacggcaagctggaattgcgtggtcttgctaccaccatcaaagccgccaagaagatg
gttgagcgtgaagaagcggttgtttgggatatcctggatgaagttatccgcgaacaccca
gtgctgctgaaccgtgcaccaacccttcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaggcaatccagttgcacccattggtttgtgcggcatataacgccgac
ttcgatggtgaccaaatggctgtccacgtaccgctgacactggaagctcagttagaagcg
cgtgcgttaatgatgtctaccaacaacatcctgtcacccgcgaacggcgagccaatcatc
gttccttctcaggacgttgtattgggtctgtactacatgacccgcgactgtgttaacgcc
aaaggcgaaggcatggttctgactggcccgaaagaagctgagcgtatttatcgcgctggc
ttggcatctctgcatgcccgcgtaaaagtacgtattaccgaagaaattcgtaataccgaa
ggcgaaagcattacgcgtaccagcattatcgatacgactgtaggccgtgctattttgtgg
atgatcgtcccgcaaggcctgccttactctatcgttaaccagccgctgggtaaaaaagct
atctctaagatgctgaacacgtgttaccgcatcttgggcttgaagccaacggttatcttt
gctgaccagatcatgtacaccggttttgcttacgcagcacgctcaggcgcctctgtaggt
atcgatgacatggttatcccagaagcgaaagcggggatcatcgaagaagctgaaactgaa
gttgctgagatccaagaacagttccaatctggtctggtcacggcaggcgaacgttataac
aaagtgatcgatatctgggctgcggctaacgaacgtgttgctaaagcgatgatggataac
ttgtcggttgaggatgttgtcaaccgtgatggcgttgttgaacagcaagtttcattcaac
agcatcttcatgatggccgactccggtgcgcgtggttctgccgcacagattcgtcagctg
gcaggtatgcgtggtctgatggctaagccagacggctcgatcattgaaacgccaatcacc
gcgaacttccgtgaaggtttgaacgtacttcagtacttcatctcaacccacggtgcgcgt
aaaggtttggcggataccgcattgaaaactgcgaactccggttacctgacccgtcgttta
gttgacgtggcacaggatctggtggtgactgaggatgattgtggtacccataacggtatc
gtgatgaccccggttatcgaaggtggtgatgttaaagagccactgcgtgatcgcgtactg
ggtcgtgtgactgcagaagaagttatcaagccaggttcggctgatattctggttccgcgt
aacaccctgctggacgaaaaatggtgtgatctgttagaagaaaactccgtcgacagcgtt
aaagttcgctccgtagtaagctgtgaaactgatttcggtgtgtgtgctaactgctatggt
cgcgacctggcacgtggccacatcatcaacaaaggtgaagcggttggtgttattgcagca
cagtccatcggtgagccgggtactcagcttacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagaatccagcatccaggttaagaacaaaggcagcttgaaactg
agcaacgtcaagttcgtgaccaatgcggctggcaagctggttattacgtctcgtaatacc
gagctgaagctgatcgacgaattcggtcgtaccaaagaaagctataaagtgccttacggt
gcggtaatggctaaaggcgatggcgcagaagttcagggcggcgaaaccgttgctaactgg
gatccgcacatcatgccagtggtcaccgaagtgagcggcttcattcgcttcgccgacatg
gttgatggccagaccattactcgccagaccgacgaactgactggtttgtcttctctggtc
gttctggacagtgcagagcgtacgggtagcggtaaagacctgcgtccagcactgaaaatc
gttgatgccaaaggcaatgacgtattgatcccaggtactgatatgcctgctcaatacttc
ctgccaggtaaagcgattgtacagctggaagacggtattcagatcggtgcgggtgatacc
ttggcgcgtattcctcaggaatcaagcggtaccaaggatattaccggtggtctgccacgt
gttgctgacttgttcgaagcacgtcgtccgaaagagcctgcaatcctggctgaaatcagc
gggatcatctcgttcggtaaagagaccaaaggcaagcgtcgtctggtgatctcaccgttg
gatggtagcgatgcatacgaagagatgattccgaaatggcgtcagcttaacgtgttcgaa
ggtgaagttgtggaacgcggtgacgtggtttccgatggcccagaatctccacatgacatt
ctgcgtctgcgtggcgttcacgcggttacccgctacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacattgaagttatcgttcgtcagatg
ctgcgtaaaggcactatcgttgatgcaggtagcaccgacttcctggaaggcgagcaggca
gaaatgtcccgcgttaaaatcgctaaccgtaagctggcagcagaaggcaaaattgaggct
acgttcactcgtgacctgctgggtatcaccaaggcatccttggcgaccgagtccttcatc
tctgcggcttcgttccaggaaaccacgcgcgttcttactgaagcggcagttgccggtaaa
cgtgatgaattgcgtggcctgaaagaaaacgtaatcgtgggccgtctgatcccagccggt
accggttatgcttatcatcaggaccgtatgcgccgtaaagcacagggtgaagcgcctgtt
gttccacaagtcagcgcggatgaagcgactgcaaacttggccgaattgcttaatgccggt
tttggtaacaacaaaggctaa

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