Yersinia pestis D182038: YPD8_1226
Help
Entry
YPD8_1226 CDS
T01833
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ypx
Yersinia pestis D182038
Pathway
ypx03030
DNA replication
ypx03430
Mismatch repair
ypx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ypx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YPD8_1226 (dnaE)
03430 Mismatch repair
YPD8_1226 (dnaE)
03440 Homologous recombination
YPD8_1226 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ypx03032
]
YPD8_1226 (dnaE)
03400 DNA repair and recombination proteins [BR:
ypx03400
]
YPD8_1226 (dnaE)
Enzymes [BR:
ypx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
YPD8_1226 (dnaE)
DNA replication proteins [BR:
ypx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
YPD8_1226 (dnaE)
DNA repair and recombination proteins [BR:
ypx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
YPD8_1226 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
MutS_II
Motif
Other DBs
NCBI-ProteinID:
ACY61911
LinkDB
All DBs
Position
1580985..1584500
Genome browser
AA seq
1171 aa
AA seq
DB search
MIQSTHFWYLDMAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCG
LVKFYGSAHGAGIKPIIGADFYVQSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY
GAAGPIIDRDWLIKHKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYLE
LIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPK
RPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGEMSTE
DFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLIVMEFIQ
WSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFCME
KRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDPGM
TLEKAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY
CDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASI
PLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVD
NFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLR
RAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSY
QTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG
EIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKLIMSGAFD
RLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQVV
LDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIAARVMVTK
RGNRIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARE
LMDISEAREKYASGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQREDARARLR
FGATWRVTPTDRLLIDLRTLVGNEQVELEFD
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgattcaatccactcatttctggtatctggatatggccgaacctcgttttgtccacctg
cgtgttcatagcgattattccatgatcgatggattagctaagattggacctttggtgaaa
agagctgctgcattaggtatgcctgctctggctattaccgattttactaacctctgtggc
ctggtgaaattctacggcagcgcgcatggtgcggggattaaacccatcatcggtgctgac
ttctacgtacaaagtgaaatactgggtgatgaattagctcacctcacggttttggctcgc
aataatgaaggctatcaaaatctgactttattgatctcagaagcctaccaacggggttat
ggcgctgcgggtcctatcattgatcgcgattggctgatcaaacataaagaaggactcatt
ctgctgtctggtggccgaatgggggatgtgggcaaatttctgctacggggtaaccaggtt
caggttgatcaatgtctcgccttttatcaggaacactttccagactgctattacctcgaa
cttattcgaaccgggcgtccagacgaagaaaactatcttcatgctgccgtggcattggcc
actgagcgtggtttacctgtcgttgcgaccaatgatgtgcgttttattgatgaatcggat
tttgatgcccatgaaatccgtgtcgctatccatgatggttttacattggtcgatcctaaa
cggccgaagaattacagccctcagcagtttatgcgcgatgaagaacagatgtgtgagctg
ttcgctgatattccagaagcgttgatcaacagcgttgagatagccaaacgctgtaatgtc
actattcgccttggggaatatttcttaccgcagttccccacaggggagatgagtacagaa
gattttctggtagaaaaagccaaacaaggtttggaagaacgtttggaatttctgtttccg
gaccctgaggttaggctgcaaaaacggccagaatatgatgaacgtctggatatcgagctc
aaagttatcaaccaaatgggcttccctggttacttcctgattgtaatggagtttatccag
tggtcgaaagataacggcgtaccggtggggccggggcgtggctctggtgcaggctcattg
gtggcttatgccctgaaaattactgatattgacccactggaatttgatctactgttcgag
cgcttccttaatccggaacgtgtatcgatgcctgacttcgacgttgacttctgtatggag
aaacgtgatctggtgatcgaacacgtggcggaaatgtatggccgcgatgcggtttcccag
ataattaccttcggtaccatggcggctaaagcggtcatccgcgatgtcggccgtgtatta
ggccatccctatggctttgttgatcggatctcaaaattaatcccactcgatccggggatg
acactggaaaaagcgtttgcagcggagccacagctagctgaaatttatgaagctgatgaa
gaggtcagggcgctaattgatatggcgcgtaagctggaaggagtaacgcgaaacgccggg
aaacatgctggaggcgtggttattgcccccactaagattaccgattttgccccactctat
tgtgatgcggaaggcaataacccagttacgcagtttgataaaaatgatgtggaatatgct
gggctggtgaagtttgacttcctcggtctacgtacactaaccatcattaattgggcgttg
gagatgattaacgcccggcgcgctaaaactggattggaacccattgatatcgcctctatt
ccgctggaggataaaaaaagcttcgatatgctgcaacgttcggaaacgacagcagtattc
cagctggaatccagagggatgaaagacttgatcaagcgcctgaagcccgactgcttcgag
gacatgatcgccttagtggcgttatttcgtcccggtccgttacaatcagggatggttgat
aactttattgaccgtaaacacggccgggaagcgatatcttacccagatattgagtggcaa
catgaatccttgaaacctgtgcttgagccgacctacggcattatcttgtatcaggaacag
gtcatgcaaattgcgcaggttctgtccggctactcactgggtggtgcggacatgttgcgt
cgtgccatgggtaagaaaaaccctgctgagatggctaagcagcgttctgtatttgaagat
ggtgcgaaaaatcagggtattgatggtgagctggcgattaaaatctttgacctggttgag
aaatttgcaggttacggttttaacaaatctcactcggcagcttatgcattagtctcctat
caaacgttgtggttaaaagcccattatccggctgaatttatggctgcagtaatgaccgct
gatatggataatacggacaaagtggtcggcttggtcgatgaatgctggcgtatggggctg
aaaattctgccccctgacatcaacagcggtttgtaccatttccatgtaaacgatgatggc
gaaattgtttatggtattggtgccattaaaggtgtaggtgaggggccgatagaagccatt
ctggaggcgcgtaaagaggggggctattttaaagagttatttgacctatgcgcccgtgtc
gataccaaaaagcttaacaagcgtattttagaaaaactgatcatgtccggtgcatttgac
cgtttggggccacaccgtgcagcattgatgagttctctcggggatgcgcttaaagccgca
gatcaacatgctaaagccgaagcaattggtcaggtagatatgtttggtgtattagccgac
gcgcctgagcaggttgagcaatcctatgccaatgtgccgccatggcaggagcaggttgtt
ttagatggtgaacgggaaacgctggggctgtatttaactggccatccgatcactcagtac
ctcaaggaaatcgaacgctatgccggtgggatgcgtttgaaggatatgcatccgacggat
cggggcaaaatgaccaccgcagtggggttggtgatcgcggcaagggttatggtcacaaaa
cgtggtaatcgcattggtatttgtacgctagatgaccgctctggtcgtctggaggtgatg
ttattcaccgatgcattggaaaaatatcagcatttattggaaaaagaccgtatcctgata
gccaccggacaggtcagctttgatgactttagtggtgggcttaaaatgaccgcccgtgag
ttaatggacatcagtgaagctcgtgaaaaatatgcaagtgggcttgctatctcgctgact
gacaggcaaattgatgaccagcttttgaaccgtctccgtcagtcgttggaaccccatcga
gcggggacgatcccagtacatctttattaccaacgggaagatgctcgcgcccggctgcgg
tttggagccacatggcgcgtgacgcccaccgatcgcttattaatcgatttgcgaacgttg
gtaggtaatgagcaagtggaactggaatttgactaa
DBGET
integrated database retrieval system
