Yersinia pseudotuberculosis YPIII (serotype O 3): YPK_1081
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Entry
YPK_1081 CDS
T00665
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ypy
Yersinia pseudotuberculosis YPIII (serotype O:3)
Pathway
ypy03030
DNA replication
ypy03430
Mismatch repair
ypy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ypy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YPK_1081
03430 Mismatch repair
YPK_1081
03440 Homologous recombination
YPK_1081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ypy03032
]
YPK_1081
03400 DNA repair and recombination proteins [BR:
ypy03400
]
YPK_1081
Enzymes [BR:
ypy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
YPK_1081
DNA replication proteins [BR:
ypy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
YPK_1081
DNA repair and recombination proteins [BR:
ypy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
YPK_1081
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
MutS_II
Motif
Other DBs
NCBI-ProteinID:
ACA67382
UniProt:
A0A0H3B2M0
LinkDB
All DBs
Position
1219602..1223117
Genome browser
AA seq
1171 aa
AA seq
DB search
MIQSTHFWYLDMAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCG
LVKFYGSAHGAGIKPIIGADFYVQSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY
GAAGPIIDRDWLIKHKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYLE
LIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPK
RPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGEMSTE
DFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLIVMEFIQ
WSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFCME
KRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDPGM
TLEKAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY
CDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINVRRAKTGLEPIDIASI
PLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVD
NFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLR
RAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSY
QTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG
EIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKLIMSGAFD
RLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQVV
LDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIAARVMVTK
RGNRIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARE
LMDISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQREDARARLR
FGATWRVTPTDRLLIDLRTLVGNEQVELEFD
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgattcaatccactcatttctggtatctggatatggccgaacctcgttttgtccacctg
cgtgttcatagcgattattccatgatcgatggattagctaagattggacctttggtgaaa
agagctgctgcattaggtatgcctgctctggctattaccgattttactaacctctgtggc
ctggtgaaattctacggcagcgcgcatggtgcggggattaaacccatcatcggtgctgac
ttctacgtacaaagtgaaatactgggtgatgaattagctcacctcacggttttggctcgc
aataatgaaggttatcaaaatctgactttattgatctcagaagcctaccaacggggttat
ggcgctgcgggtcctatcattgatcgcgattggctgatcaaacataaagaaggactcatt
ctgctgtctggtggccgaatgggggatgtaggcaaatttctgctacggggtaaccaggtt
caggttgatcaatgtctcgccttttatcaggaacactttccagactgctattacctcgaa
cttattcgaaccgggcgtccagacgaagaaaactatcttcatgctgccgtggcattggcc
actgagcgtggtttacctgtcgttgcgaccaatgatgtgcgttttattgatgaatcggat
tttgatgcccatgaaatccgtgtcgctatccatgatggttttacattggtcgatcctaaa
cggccgaagaattacagccctcagcagtttatgcgcgatgaagaacagatgtgtgagctg
ttcgctgatattccagaagcgttgatcaacagcgttgagatagccaaacgctgtaatgtc
actattcgccttggggaatatttcttaccgcagttccccacaggggagatgagtacagaa
gattttctggtagaaaaagccaaacaaggtttggaagaacgtttggaatttctgtttccg
gaccctgaggttaggctgcaaaaacggccagaatatgatgaacgtctggatatcgagctc
aaagttatcaaccaaatgggcttccctggttacttcctgattgtaatggagtttatccag
tggtcgaaagataacggcgtaccggtggggccggggcgtggctctggtgcaggctcattg
gtggcttatgccctgaaaattactgatattgacccactggaatttgatctactgttcgag
cgcttccttaatccggaacgtgtatcgatgcctgacttcgacgttgacttctgtatggag
aaacgtgatctggtgatcgaacacgtggcggaaatgtatggccgcgatgcggtttcccag
ataattaccttcggtaccatggcggctaaagcggtcatccgcgatgtcggccgtgtatta
ggccatccctatggctttgttgatcggatctcaaaattaatcccactcgatccggggatg
acactggaaaaagcgtttgcagcggagccacagctagctgaaatttatgaagctgatgaa
gaggtcagggcgctaattgatatggcgcgtaagctggaaggagtaacgcgaaacgccggg
aaacatgctggaggcgtggttattgcccccactaagattaccgattttgccccactctat
tgtgatgcggaaggcaataacccagttacgcagtttgataaaaatgatgtggaatatgct
gggctggtgaagtttgacttcctcggtctacgtacactaaccatcattaattgggcgttg
gagatgattaacgtccggcgcgctaaaactggattggaacccattgatatcgcctctatt
ccgctggaggataaaaaaagcttcgatatgctgcaacgttcggaaacgacagcagtattc
cagctggaatccagagggatgaaagatttgatcaagcgcctgaagcccgactgcttcgag
gacatgatcgccttggtggcgttatttcgtcccggtccgttacaatcagggatggttgat
aactttattgaccgtaaacacggccgagaagcgatatcttacccagatattgagtggcaa
catgaatccttgaaacctgtgcttgagccgacctacggcattatcttgtatcaggaacag
gtcatgcaaattgcgcaggttctgtccggctactcactgggtggtgcggacatgttgcgt
cgtgccatgggtaagaaaaaccctgctgagatggctaagcagcgttctgtatttgaagat
ggtgcgaaaaatcagggtattgatggtgagctggcgattaaaatctttgacctggttgag
aaatttgcaggttacggttttaacaaatctcactcggcagcctatgcattagtctcctat
caaacgttgtggttaaaagcccattatccggctgaatttatggctgcagtaatgaccgct
gatatggataatacggacaaagtggtcggcttggtcgatgaatgctggcgtatggggctg
aaaattctgccccctgacatcaacagcggtttgtaccatttccatgtaaacgatgatggc
gaaattgtttatggtattggtgccattaaaggtgtaggtgaggggccgatagaagccatt
ctggaggcgcgtaaagaggggggctattttaaagagttatttgacctatgcgcccgtgtc
gataccaaaaagcttaacaagcgtattttagaaaaactgatcatgtccggtgcatttgac
cgtttggggccacaccgtgcagcattgatgagttctctcggggatgcgcttaaagccgca
gatcaacatgctaaagccgaagcaattggtcaggtagatatgtttggtgtattagccgac
gcgcctgagcaggttgagcaatcctatgccaatgtgccgccatggcaggagcaggttgtt
ttagatggtgaacgggaaacgctggggctgtatttaactggccatccgatcactcagtac
ctcaaggaaatcgaacgctatgccggtgggatgcgtttgaaggatatgcatccgacggat
cggggcaaaatgaccaccgcagtggggttggtgatcgcggcaagggttatggtcacaaaa
cgtggtaatcgcattggtatttgtacgctagatgaccgctctggtcgtctggaggtgatg
ttattcaccgatgcattggaaaaatatcagcatttattggaaaaagaccgtatcctgata
gccaccggacaggtcagctttgatgactttagtggtgggcttaaaatgaccgcccgtgag
ttaatggacatcagtgaagctcgtgaaaaatatgcccgtgggcttgctatctcgctgact
gacaggcaaattgatgaccagcttttgaaccgtctccgtcagtcgttggaaccccatcga
gcggggacgatcccagtacatctttattaccaacgggaagatgctcgcgcccggctgcgg
tttggagccacatggcgcgtgacgcccaccgatcgcttattaatcgatttgcgaacgttg
gtaggtaatgagcaagtggaactggaatttgactaa
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