Yersinia pseudotuberculosis YPIII (serotype O 3): YPK_3278
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Entry
YPK_3278 CDS
T00665
Name
(GenBank) SMC domain protein
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ypy
Yersinia pseudotuberculosis YPIII (serotype O:3)
Brite
KEGG Orthology (KO) [BR:
ypy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ypy03400
]
YPK_3278
DNA repair and recombination proteins [BR:
ypy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
YPK_3278
Archaeal homologous recombinant proteins
YPK_3278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
AAA_21
cobW
ABC_tran
nSTAND3
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
ACA69547
UniProt:
A0A0H3B6J1
LinkDB
All DBs
Position
3585850..3589539
Genome browser
AA seq
1229 aa
AA seq
DB search
MKILSLRLKNINSLQGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHQTPR
LIVTPSQNELMTRHTAESLAEVEFDVKGIRYRAFWSQRRARNSPDGNLQAPKVELALCEN
GKILADKVRDKLDMIAAITGLDFGRFTKSMMLSQGQFAAFLNADANDRAELLEELTGTDI
YGRLSERVFEKHKQAKIDLDALHQRASGIELLNEEQRLALAQQIDALSQQEQQLSKEQLV
TQNQINWLTGWQQQQQHVQQYQQQQVLVEQEYQQALPGLQRLARSEPAEKLRPLQRERDR
SQKDLQQTQQRITALAQQQQQYLAQLTPLTQAVEQATAARQQQQLNQHEQETLIEQRIVP
LDNLITQQQQTLSQLAGQIQQLRAKEQQNSQQLALNEQKLLQTHQRLQQLADYANLHAHH
QHWEKHLPLWHEQFRQLQLQQQQSAQSEQQLHQQTTLLATLQQQATTLSAQEKQQQVALA
EARAQASYLQQKLLVLEQQQPSAQLRQQLNEFNEQRQICQQLAALSPLAQQIQALYDKQQ
QQFTAQQQQLKQLEQQLTEKRQLYQQQKQHLVDLEALLEREKQIVTLEAERAKLQPGDAC
PLCGAVEHPAITAYQAVKPSETAVRVAKLRLQVEQLYTEGTELRTQVASMQQHQQRIEQE
LQDHRQQLAAYQQRWQTLAQPLSLAFTLNEPDALALWLEQHEQQEQACQLKLVEYERLTQ
QYQQAKDILTQLEQRQQEHQQQLALITERQKNAQQTYQQLQSQYQHQQEALIAQQQVLNH
TLTELSLSVPDADQQQNWLAQREEECQRWQQHQQEQQRLTIEQKTLETRIENERRHLQEC
IDQLSALSQQRQQAETLLQQQIQQRRALFGEDIVAEVRQRLRLQQQQAELAQQNAEKALQ
QAQSQLNRLSGELTGLEQQCQQYQQRATTTQAELQQALSTSEFADETALTAALLSEEERQ
HLQQLQQQLNERRQQAQIRLQQAREILDQHLQLCPQGVDKSSELTLLQQQSEQLLAQLKT
TTLRQGELRNQLESDTTRRHNQRTLFEQIERSQQQYDDWSYLNQLIGSKEGDKFRKFAQG
LTLDHLVYLANNQLSRLHGRYLLQRKTTDALELQVVDTWQADAIRDTRTLSGGESFLVSL
ALALALSDLVSHKTSIDSLFLDEGFGTLDAETLDTALDALDSLNASGKTIGVISHVEAMK
DRIPVQIKVKKVNGLGVSRLDNAFRVNQD
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattttgagcctacgtctgaaaaacattaactcattacagggcgaatggaagata
gatttcactgccgaaccttttgccagtaacggcttatttgctatcaccggcccaactggc
gcgggaaaaaccacgctgttagatgctatctgtctggcgttgtaccaccaaacccctcgc
ctcatcgtaacccccagccagaatgaactgatgacgcgccatactgcagaatcactggca
gaagttgaatttgacgtgaaaggtatccgttatcgcgccttttggagccagcgccgtgcc
agaaacagcccagatggcaatctgcaagcccccaaagtagaactggccttatgcgaaaac
ggcaaaatcttggccgataaggtccgcgataaattagatatgatcgcggcaatcaccggt
ctggactttggccgttttaccaagtccatgatgctgtcacaggggcaatttgccgccttc
ctcaatgcagatgccaatgatcgcgctgagttactggaagaattgacgggaaccgacatc
tacggacgtctatctgaacgcgtatttgaaaaacataaacaagccaagatcgatctggat
gcattgcaccaacgtgccagcggcattgaactgttaaatgaagaacaacgcctggccctg
gcacagcaaattgatgcactgagtcaacaagagcagcagctcagtaaagaacaactcgtc
acgcaaaaccaaataaactggctaacaggttggcagcagcagcaacaacacgtacagcaa
tatcagcagcaacaggtgctcgttgagcaagagtatcaacaggcactacccggcctacaa
cgtttagcgcgtagcgaaccggcagaaaaattgcgcccgttgcaacgagaacgtgaccgt
agccaaaaagatttacaacaaacacagcaacgcatcaccgcattggcacaacaacagcag
caatatctggcacagctcacaccactgactcaggcagtagagcaagccactgcggcacgc
caacagcaacagcttaatcaacatgagcaagaaacactcatcgaacaacggatcgtgccg
ctggataaccttatcacccagcagcagcagacattgtcacaacttgcagggcaaatacag
caattacgcgctaaagagcagcaaaacagccaacaacttgcgctgaatgagcaaaaacta
ttgcagacccatcaacgcctgcaacagctagcagactatgccaatttacatgcccatcat
cagcactgggaaaaacatcttcccttatggcatgagcagttccgccaattacaactacag
caacaacaatcagctcaaagtgagcaacaactacaccaacaaacaaccttactcgccacg
ctgcaacagcaggctacaacactaagtgcgcaagagaaacaacaacaagtggccttagcg
gaggctcgcgcacaggcaagctatcttcagcagaaattattagtccttgaacaacagcaa
ccttcagcacagttgcgccagcaactaaacgagttcaatgagcaacgtcagatatgccaa
caactggcggctttatcgcctttagcacaacaaatacaagcactctatgataagcagcag
caacaatttacggctcagcagcaacagcttaaacagttagagcaacagttaaccgaaaaa
cgccagttatatcagcagcagaaacaacatctggttgatttagaagccttactggaacgc
gaaaaacagattgtcacactggaagcagaaagagccaaactgcaaccaggagatgcctgc
ccgctatgtggtgctgtggagcacccggcgattactgcgtaccaagcagtgaaaccctca
gaaacagccgtgcgagttgcaaaactgcgcctacaggtcgaacagctttacactgaaggc
actgagttgcgtacccaagttgcaagcatgcaacaacatcagcagcgtatagagcaagag
ttacaagaccatcgccaacagttagctgcatatcagcaacgttggcaaacactggcacaa
ccgttatcactggccttcaccttgaatgaacctgacgcattagccctgtggctagagcaa
catgagcagcaagaacaggcgtgtcaactaaagctggtggagtatgagcgtctgactcag
cagtatcagcaggccaaagatatcctgacccagttggaacaacggcagcaagaacatcaa
caacagttggcactgatcactgaacgccaaaaaaatgctcaacaaacctaccaacagctg
caatcgcaatatcagcaccagcaagaagcacttatagctcagcagcaagtgttaaaccat
acgctgactgaattgtccttatcagtacccgatgccgatcaacaacagaattggctagca
cagcgggaagaggaatgtcagcgctggcaacaacatcagcaagagcaacagcggctcact
attgaacaaaaaacgctggaaacacgtattgagaatgaacggcgtcatttacaggagtgt
attgaccaattatcggcgctaagtcaacaacgccagcaagctgaaacgctattacagcag
caaatccagcagcgccgggcactgtttggtgaagatatcgttgccgaagtccgccagcga
ttacgcttacagcagcaacaggcagagcttgcccagcaaaacgcagaaaaagccctacaa
caggctcaatcccaactgaataggctatcaggtgaactgaccgggctggagcaacaatgc
caacagtatcagcaacgtgctaccaccacacaggctgaattgcaacaagcactgtccacc
agcgaatttgctgatgaaacggcattaaccgcagccctgttaagtgaagaagaaaggcag
catctacaacaattgcaacagcaattaaatgagcgacggcaacaagctcagatccgcctg
caacaagccagggagatattggatcaacatttacagctttgtccccaaggtgtcgataag
tcctctgaattaaccttattacaacaacagtcagaacagctattggcacaactgaaaacc
acaacgttacggcaaggcgaactacgcaatcagttagaaagcgacaccactcgacgtcat
aatcaacgtacgctatttgaacaaattgagcgtagtcagcagcaatatgatgactggagt
tacctcaatcaattaattggctccaaagaaggcgataaattccgtaaatttgcgcaaggt
ctcacactcgatcatctggtttatctggccaataaccaacttagtcgtttacatgggcgc
tatctattacaacgtaagactacagatgcattggaattacaggtggtagatacctggcaa
gcggatgccatacgcgatactcgcaccctgtcaggaggagagagttttctggtgagtctg
gcgctagcattagcactgtctgatttagtcagccataaaaccagtattgactcactgttt
cttgatgaaggcttcggtacgttggatgctgaaacattggataccgcactggatgccttg
gatagcctgaatgcttccggcaaaactattggggtgataagccatgtagaggcaatgaaa
gatcggatcccggtgcagataaaagtgaaaaaagttaacgggttaggcgtcagccgtttg
gataatgccttccgagtcaatcaagactga
DBGET
integrated database retrieval system
