Yersinia pseudotuberculosis YPIII (serotype O 3): YPK_3998
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Entry
YPK_3998 CDS
T00665
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ypy
Yersinia pseudotuberculosis YPIII (serotype O:3)
Pathway
ypy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ypy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YPK_3998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ypy03019
]
YPK_3998
03400 DNA repair and recombination proteins [BR:
ypy03400
]
YPK_3998
Enzymes [BR:
ypy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
YPK_3998
Messenger RNA biogenesis [BR:
ypy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YPK_3998
DNA repair and recombination proteins [BR:
ypy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
YPK_3998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Peptidase_S66
zf-CXXC
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
ACA70261
UniProt:
A0A0H3B901
LinkDB
All DBs
Position
complement(4409288..4411081)
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AA seq
597 aa
AA seq
DB search
MQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSP
LISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQIKLLYIAPERLVMESFLD
QLYQWRPALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATADEATRGDIV
RLLNLDQPLIQISSFDRPNIRYTLVEKFKPLDQLWRFVQDQRGKSGIIYCNSRAKVEDTT
ARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGINKPNVRFVVHFDI
PRTIESYYQETGRAGRDGLPAEAVLLYDPADMAWLRRCLEEKPAGAQQDIERHKLNAMGA
FAEAQTCRRLVLLNYFGEGKQQPCGNCDICLDPPKRYDGLADAQKALSCVYRVGQRFGLG
YIVEVLRGANNQRIREMGHDKLSVYGIGREQTHEHWVSVLRQLIHLGLLSQNIAQFSALQ
LTEAARPVLRAELPLQLAVPRIQSLKVRSSANQKSYGGNYDRKLFAKLRKLRKSIADEGN
IPPYVVFNDATLLEMAEQMPITASELLSVNGVGQRKLERFGAPFMALIRDHVDNNDD
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggtattgcgagatacttttggttatcagcaatttcggccagggcagcaggagatc
atcaacgcgacattgtcaggccaggattgtctggttgtgatgccaactggcggcggtaag
tccttgtgttatcagatccctgccttggtgaccgatgggctgacattggtggtttcaccg
cttatctctctgatgaaagatcaggttgaccaactgttggcctatggcgtgggcgcgggt
tgtctaaactcatcgcagacccgtgaacagcaactggccgttatggatggttgccgcagt
gggcagattaaattgctgtatatcgcgccagaacggttggtgatggagagttttcttgat
caactgtatcaatggcgacccgccttgctggcagtggatgaggctcactgtatttcccaa
tgggggcatgatttccgcccggaataccgtgctcttggtcagttaaagcagcgtttccct
gatctaccggttattgcattgaccgctacggctgatgaagcgacgcgtggcgatattgtg
cgcctgttgaatctggatcaacctctgattcagatcagtagttttgatcgcccgaatatc
cgctataccttagttgagaagtttaaacctctcgatcaactgtggcgttttgtacaagac
cagcgcggcaagagcggcattatttactgtaatagccgagcgaaagtggaagatacgacc
gcccgtttgcaaagccgtggcttgagtgttgccgcctatcacgccgggctggataacgag
cgccgtgctcaggtgcaagaggctttccagcgcgatgacttacaagtggtggtcgccacc
gtagcgtttggaatggggattaacaaaccgaacgtccgctttgtcgtgcattttgatatc
ccacgcaccatcgaatcctactatcaggaaacggggcgcgccgggcgtgatggcttaccg
gctgaggccgtgttgttgtacgatccggcagatatggcgtggttacgccgttgtcttgaa
gagaaacctgcgggtgctcagcaagatatcgaacggcataaactcaatgcgatgggggca
tttgccgaagcgcaaacctgtcgccgtttggtgctgctcaactattttggtgaaggtaaa
cagcagccatgcggtaactgcgatatttgtctggatccgccaaagcgctacgatggtctg
gcagatgcgcaaaaggcgctctcttgcgtctatcgggtagggcaacgctttggcttaggg
tacatcgttgaggtgctgcgtggggcgaataaccagcgtattcgtgagatgggccatgac
aagctttcggtgtacggtattggccgtgagcaaacccatgaacactgggtcagcgtcttg
cgccagttgatccatttggggctgctcagccagaatattgcccagttctctgccttgcaa
ctgactgaagcggcgcgcccggtcttacgcgcagagctgccattacaactggcggtaccg
cgtattcagagtctgaaagtgcgtagcagtgccaatcagaaatcctatggtggcaattat
gatcgcaagttgttcgctaagctgcgcaaactgcgtaaatcaattgctgatgaaggcaat
atcccgccttatgtggtgtttaacgatgcgaccttgctggagatggctgagcagatgccg
attactgccagcgagctattgagcgttaatggtgtcggtcagcgtaaactagaacgtttt
ggtgcaccatttatggccctgatccgtgatcatgtggataacaacgatgactaa
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