Yersinia pseudotuberculosis YPIII (serotype O 3): YPK_4007
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Entry
YPK_4007 CDS
T00665
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ypy
Yersinia pseudotuberculosis YPIII (serotype O:3)
Pathway
ypy03420
Nucleotide excision repair
ypy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ypy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
YPK_4007
03430 Mismatch repair
YPK_4007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ypy03400
]
YPK_4007
Enzymes [BR:
ypy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
YPK_4007
DNA repair and recombination proteins [BR:
ypy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
YPK_4007
MMR (mismatch excision repair)
Other MMR factors
YPK_4007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_22
PhoH
DUF4391
YccJ
Motif
Other DBs
NCBI-ProteinID:
ACA70270
UniProt:
A0A0H3B8Q4
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All DBs
Position
complement(4418757..4420919)
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AA seq
720 aa
AA seq
DB search
MDVSDLLDSLNEKQRDAVAAPRGNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIISV
TFTNKAAAEMRHRIEHLIGTSQGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQL
RLLKRLVKALNLDEKQWPPRQAMWYINGKKDEGLRPQHIESYGNPVEATWLRIYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILNHYRERFTNILVDEFQDTNNIQYAWIRLLAGER
SNVMIVGDDDQSIYGWRGAQVENIQRFLKDFPGAETIRLEQNYRSTSTILAAANALIANN
DGRMGKNLWTDGAEGEPISLYCAFNELDEARFVVNRIKAWQDNGGALNDCAILYRSNAQS
RVLEEALLQTATPYRIYGGQRFFDRQEIKDSLAYLRLISNRNDDAAFERVVNTPTRGIGD
RTLDVVRQTARDRQLTLWQSTRAMLQEKVLAGRAASALQRFVELIDSLARETADMPLHVQ
TDRVIRDSGLWSMYEQEKGEKGQARIENLEELVTATRQYSYQDEDQDLMPLQAFLSHAAL
EAGDGQADAYKDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY
VGLTRAMQKLTLCYAESRRLYGKEVNHRPSRFIGELPQECVEEVRLRASVSRPVNHRRMG
TPMHENDSGFSLGQRVRHPKFGEGTIVNLEGSGEHNRLQVAFPGEGIKWLVAAYARLEPV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttctgatctgctcgacagcctgaatgaaaaacaacgtgacgccgtggccgcg
ccgcgcggcaacttgttggtactggccggtgcaggcagtggcaaaacgcgggtgctggtt
caccgtatcgcctggctgttgtcggtagagaatgcctcgccgtattcgattatctcggta
acctttaccaataaagcggcggctgaaatgcgccaccgtattgaacatctgattggcacc
agccaaggcgggatgtggatcgggactttccacggtttggcgcaccgcctgctgcgtgct
caccatctggatgccaatctgccacaagattttcaaatcctggatagcgatgaccaactg
aggttattgaaacgcctggtcaaagcactcaatttggatgagaaacaatggcccccgcgt
caggcgatgtggtacatcaacggcaaaaaagacgaagggctgcgcccacaacatattgag
agctacggtaatccggttgaggccacctggctacgtatctatcaggcttatcaggaagcg
tgcgaccgcgcgggtctggttgattttgccgagctgttgctacgagcgcacgagctgtgg
ctgaacaaaccacatattcttaatcattatcgtgaacgctttaccaatattttggtggat
gagtttcaggataccaacaacatccaatatgcctggatccgcttgttggccggtgaacgt
tccaatgtgatgatcgtcggcgacgatgaccagtcaatctatggttggcgcggcgcgcag
gtcgagaatatccaacgtttcttgaaggatttccccggtgcggagaccatccgcctggag
cagaattaccgctcgaccagcaccattctggctgccgccaatgccctgattgccaacaat
gacggccgcatgggtaaaaatctgtggaccgatggcgcggagggcgaacctatctccctc
tattgtgcgtttaacgagttagatgaagcccgttttgtggtcaatcgtatcaaagcctgg
caggacaacggcggtgcgctaaatgattgtgccattttgtaccgtagcaacgcccaatcg
cgcgtattagaagaagcgttactgcaaacggcaacaccgtaccgtatttatggggggcag
cgcttcttcgaccgccaggaaattaaagactcactggcttatctgcgcctgatctccaat
cgtaatgacgacgccgcgtttgaacgggtggtgaatacacccactcgggggattggcgat
cgcacattggatgtggtgcgtcaaaccgcccgtgaccgccagttaacgctatggcaatca
acccgtgccatgttgcaggaaaaagtgctggcagggcgtgccgcgtccgcattacaacgc
tttgtcgagctgatcgattcactggcgcgcgaaacggctgatatgccgctacacgtgcaa
actgatcgcgttattcgtgattctggcttgtggtcgatgtacgaacaggaaaaaggcgag
aaaggtcaggcacgtatcgagaaccttgaagagctggttacggcgacccgtcaatacagc
tatcaggatgaagatcaggatctgatgccgctacaggccttcttatcccatgcggcactg
gaagccggagatggccaggccgatgcctataaggatgcggtgcaattaatgactctccat
tcagcgaaaggcttggagtttccacaggtatttattgtgggaatggaagaagggatgttc
ccgagccaaatgtcattggatgagggggggcgtttggaagaggagcggcgtttggcctac
gtggggttaacccgtgcgatgcagaaactgacgttatgttacgccgaaagccgccgccta
tacggtaaagaggtcaatcaccgcccttcacgctttatcggcgaactgccgcaggagtgc
gtcgaagaggtccggctgcgcgccagtgtttcccgcccggtgaatcaccgccgaatgggg
actccgatgcacgagaatgacagcggtttctcattgggccagcgagtgcggcaccctaaa
tttggcgagggtactattgtgaatttggaaggcagtggtgagcacaaccggttgcaggtt
gccttccccggagaggggattaagtggctggtcgcggcctatgcgcgtctggaacccgtg
taa
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