Yersinia pestis Z176003: YPZ3_0928
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Entry
YPZ3_0928 CDS
T01210
Name
(GenBank) exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ypz
Yersinia pestis Z176003
Pathway
ypz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ypz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
YPZ3_0928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ypz03400
]
YPZ3_0928
Enzymes [BR:
ypz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
YPZ3_0928
DNA repair and recombination proteins [BR:
ypz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
YPZ3_0928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
vWA-TerF-like
Motif
Other DBs
NCBI-ProteinID:
ADE63838
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All DBs
Position
1205339..1208818
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AA seq
1159 aa
AA seq
DB search
MVTFTEAATEELRGRIRDNIHGLRIACVRGVSDDPMYQALLAEITDWAVAAAQLLAAERQ
MDEAAIYTIHGFCQRMLANNAFESGILFEQTLVQDELPLWRQACADFWRRHCYPLPLVIA
RAVSQEWSGPEALLSDLSAYLQGETPKFRQAPGDDETILSRHQHVVTQIDALKAEWRLAA
PELEALISRSGVDKRSYSSKHLPNWLEKVGLWAEQETEDYQLPKELEKFRQSVLLEKTKK
GAAPQHTLFSAIDSIFEQPLTLRDLILARAISEIRFSVQQEKRQRAELGFDDLLSKLDAA
LQQSGGELLAQSIRTRYPVAMIDEFQDTDPQQYRIFHTVYGGQEACALLLIGDPKQAIYA
FRGADIFTYIRARSEVSAHYTLETNWRSSFPMVQSVNRLFSLVNTPFLFEQIPFINVAAA
KKNHDLSFEIKGEKQPALHFWLQPGDGVGVSEYQQVMARQCAAQIRDWLTAGQQGQAELL
TTKGPKPVQASDITILVRSRAEAALIRDALSALAIPSVYLSNRDSVFETTEAKDLLWLLQ
AVLAPEQERALRSAMATGILGLDARMLDALNHDERAWDALVDEFDHYRQHWQRRGVLPML
REMMARRHLAENLLATPGGERRLTDLLHLGELLQEAASQLDSEHALIRWLAQQIAQPNPQ
SDSQQLRLESDRHLVRVVTIHKSKGLEYPLVWLPFIGNFRQQQNVLYHDRHSFEALLDLN
ADEESQALAEEERLAEDLRLLYVALTRSVYHCSVGIAPLIKGGRKKQGESDMHRSALGYL
VQHGQPGDAHVLSEKLTELARSSNGDICVSPVEPPDDKPWQPQPEALPELTARHFTRKMQ
DYWRVTSYSGLQQSGSTKKLYGSATGDVSQALGAPLQVLLPRLDIDAVGEQAVVTEDDHL
TPHTFPRGAAPGTFLHDLLEPLDFSQPIELAWLSERLQQQGFSEQWAPVLHQWLNDIVQT
PLTDTGATLAGLSPERKQAELQFYLPIDSLLRAEVLDRLIKQYDPLSRQCPVLDFQQVRG
MLKGFIDLVFCWQGQYYLLDYKSNWLGEDSRAYTVEAMTQAMAEHRYDLQYQLYTLALHR
YLRHRLADYDYQRHFGGVIYLFLRGVDQQHSGHGIFNCRPEQKLIEEMDRLFSGTIGSNA
TASDKSGSNVIHSGERASR
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
gtggtgacctttactgaagccgcgaccgaagagctcagggggcgaattcgcgataatatt
catgggttgcgtatcgcttgcgttcggggagtcagtgatgacccaatgtaccaggctcta
ttagccgaaatcaccgattgggccgtagccgccgcgcaattattggcggctgagcgtcag
atggatgaagccgcgatttacactattcatggtttctgccaaagaatgctggcaaataac
gcttttgaatccggcattttattcgaacaaacgttagttcaggatgaactcccgttatgg
cggcaggcctgtgctgacttctggcggcgtcattgttatccgcttcccttagtcatcgca
cgggcggtcagtcaggagtggagcgggccggaggcattactcagtgatctgagtgcttat
ttacaaggtgaaacgccaaagtttcggcaagcgcccggtgacgatgaaacgatccttagc
cgccatcagcacgttgtgacacagattgatgcacttaaagcagagtggcgcttagccgcc
cctgaattagaagcattaattagtcgttctggcgttgataaacgcagttatagcagcaag
cacttacccaactggctggaaaaagtaggattatgggcggagcaggaaacggaagattat
caattacccaaagaactggaaaaatttcgccagtcggtgttattggaaaagaccaagaag
ggagccgccccacaacatactttatttagtgcgatagactcgatatttgaacagccccta
acgttgagggatcttattttagcccgagccatcagcgaaatacggttttctgtacagcag
gaaaaacggcagcgtgcagagctggggtttgatgatttactcagtaagttagatgccgca
ttacaacaatcggggggtgagttgctcgcccaatctattcgtacccgttatcccgttgca
atgattgatgaatttcaggataccgacccgcaacaataccgcattttccacaccgtttat
ggcgggcaagaagcgtgcgctttactgttgatcggtgatcctaaacaggctatttatgct
tttcgtggcgcagatatatttacctatattcgcgcccgttcagaagtaagcgcccactac
acattggaaaccaactggcgctcttcttttcccatggtgcaatcagtgaacaggctattt
agtctggttaatacgcctttcttatttgagcaaatcccctttattaatgtcgccgccgcc
aaaaagaatcatgatttatcctttgaaattaaaggagaaaagcaacctgcgctacatttt
tggctgcaacccggtgacggtgttggtgtaagtgagtaccaacaagtaatggctagacaa
tgtgcagcgcaaattcgtgattggttgactgccggccagcaggggcaagcagaactactg
accacgaaaggaccaaaaccggttcaggcatcagatataaccatactggtgcgtagccgg
gcagaggccgcattgatacgtgatgcacttagtgcgctggcgatcccatcggtctattta
tctaatcgtgacagtgtctttgagactacagaagccaaagatctcttgtggttactgcaa
gccgtgttagcaccagagcaggagcgcgcactacgtagtgctatggctacggggatcttg
gggttggatgccagaatgttggatgcgttaaatcacgatgagcgagcttgggatgcgctg
gtcgatgagtttgatcactatcgccagcattggcagcgccgtggggtattacccatgctg
cgggagatgatggcccgccgccatttagctgaaaacttgttggcaacacccggtggggag
cgtcggctgacagatttactacatcttggggaattactgcaagaggccgcctcgcaactg
gatagtgagcacgcactaattcgctggttggcccagcaaattgctcaacccaatccccag
tcagatagccaacaattacgcttggaaagtgatcgccatttggttcgagtggttactatc
cataaatcgaaagggttggaatatccattagtttggctgccttttatcggtaattttcgg
caacaacagaatgtgctttaccatgaccgacatagctttgaggctttactcgatcttaat
gctgatgaagaaagccaggctttagctgaagaagaacgtctggctgaggatttacggcta
ttgtatgtcgcgttgacgcgttcggtttatcattgcagcgtgggcattgcaccgctgatt
aaaggggggaggaaaaagcaaggcgagagtgatatgcatcgcagtgcgttaggttatttg
gttcagcatggtcaacccggtgatgctcatgttctaagcgaaaagttaactgagttagcg
cgctcatcgaatggtgatatttgcgtttcgcccgttgagcctcctgatgataaaccttgg
caaccacagcccgaagccttgcctgaacttaccgcccgccattttactcgaaaaatgcaa
gattattggcgcgtaaccagctattcaggtttacagcagtctggctctacaaagaagctg
tatggttctgcaacaggggacgtatcgcaggctctgggggcaccattacaggtcttgttg
ccacggttggacattgatgccgtaggtgagcaggcggtggtgacagaagacgatcattta
acacctcataccttccctcggggagcggccccagggactttcttacatgatttgcttgag
ccattagattttagtcaaccgattgaattggcgtggttgtctgagcggctacagcaacag
ggttttagcgaacagtgggcaccggtgttacaccagtggctaaatgatatagtgcaaacg
ccgcttaccgataccggggccactttggctgggttgtcgccagagcgcaaacaggccgag
ctacaattttatctacccatcgatagcctgctacgggccgaggtattagaccgtttaatc
aaacagtatgatccactttcccggcagtgccctgtattggattttcaacaggttagaggg
atgctcaaggggtttattgacttggttttttgctggcaggggcaatattacttgctggat
tacaaatccaattggttgggtgaggacagtcgtgcttataccgttgaggcgatgacacaa
gcgatggctgaacatcgctatgatctgcaataccaactttatactttggctttacaccgc
tatttacgccatcgtttggccgattatgactatcaacgccactttggtggggttatttac
ctcttcttgcgcggcgttgatcagcaacattcagggcacggtatttttaattgccggcct
gaacagaaactgattgaagaaatggatcgcttattcagtggcacaattggcagtaacgca
accgcgagtgacaaaagcggtagcaatgtcattcacagcggcgagagggcatcacgatga
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