KEGG   Yersinia pestis Z176003: YPZ3_2801
Entry
YPZ3_2801         CDS       T01210                                 
Symbol
ribD
Name
(GenBank) riboflavin biosynthesis protein RibD (includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase)
  KO
K11752  diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Organism
ypz  Yersinia pestis Z176003
Pathway
ypz00740  Riboflavin metabolism
ypz01100  Metabolic pathways
ypz01110  Biosynthesis of secondary metabolites
ypz01240  Biosynthesis of cofactors
ypz02024  Quorum sensing
Module
ypz_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Brite
KEGG Orthology (KO) [BR:ypz00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00740 Riboflavin metabolism
    YPZ3_2801 (ribD)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    YPZ3_2801 (ribD)
Enzymes [BR:ypz01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.193  5-amino-6-(5-phosphoribosylamino)uracil reductase
     YPZ3_2801 (ribD)
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.26  diaminohydroxyphosphoribosylaminopyrimidine deaminase
     YPZ3_2801 (ribD)
SSDB
Motif
Pfam: RibD_C dCMP_cyt_deam_1 MafB19-deam
Other DBs
NCBI-ProteinID: ADE65711
LinkDB
Position
complement(3597696..3598805)
AA seq 369 aa
MQPDEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMA
GEKARGATAYVTLEPCSHYGRTPPCADALVAAGVIRVVAAMQDPNPEVAGRGLYKLKQAG
IAVDHGLMLAEAEAVNLGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQD
VQRFRAESSAILSTSATVLADDPSLTVRWQDLDAETQVLYPHDSVRQPVKIILDSHNRVT
PRHKVIQQDGPCWLARVDADDQPWPGNIEQLLLPRYGNGVDLVVLMMQLGKRNINSVWVE
AGPQLAGALLQAGVVDELILYIAPKLLGSDARGLCELAGLTNLSQAPEFAFSDVRLVGPD
LRLRLKPKY
NT seq 1110 nt   +upstreamnt  +downstreamnt
atgcagcccgatgagttctatatggcccgagcttttgaactggcgcgtttggggcgcttt
acgacgtcgcctaaccccaatgtaggctgtgtcttggttcgtgatggcgagatcgtcggc
gaaggttaccacttacgtgctggagagccgcatgctgaagtgcatgcgttacgtatggcg
ggtgagaaagcgcgaggagccacggcttatgtcactcttgagccgtgtagccattatggt
cggacgccaccttgtgctgatgcgttggtcgccgcaggtgtgatacgggttgttgctgcc
atgcaggatcctaatccagaagttgccgggcgagggctgtataaattaaaacaggccggt
atcgctgtcgatcatggcttgatgttagctgaggccgaggctgttaaccttggtttcttg
aagcgtatgcggactggtttcccttatgtgcaattgaaaatggcggcatcattggacggg
cgtacagccatggcatcaggtgagagccagtggattacctcaccacaggcacgccaggat
gtgcaacgctttagggccgagagttcagctattctcagtaccagtgccacagtattggca
gatgacccttcgctgacggtacgctggcaggatttagatgccgaaacgcaggttttgtat
cctcatgatagtgttcgacagccagtaaaaattatactcgatagccataaccgcgtgact
ccacggcataaagtgatacagcaagacggcccatgctggctggctcgcgtagatgccgat
gatcagccatggcctggcaatatcgaacaactgttgctaccacgttatggtaatggcgtg
gacttggttgtgttgatgatgcaattggggaaacggaatattaactctgtctgggtagag
gctgggccacaactggcgggtgcattgttacaagccggagtggtggatgagttaatcctt
tatatcgcccccaaactcttgggcagtgatgcgcgtggattatgcgagctagctgggctg
acgaatttatcgcaagcgcctgagtttgcatttagcgatgtacggctggtcggtccggac
ttgcgtttacgcttgaagccaaagtattaa

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