KEGG   Yersinia ruckeri Big Creek 74 (serotype O2): UGYR_00095
Entry
UGYR_00095        CDS       T03887                                 
Symbol
helD
Name
(GenBank) DNA helicase IV
  KO
K03658  DNA helicase IV [EC:5.6.2.4]
Organism
yrb  Yersinia ruckeri Big Creek 74 (serotype O2)
Brite
KEGG Orthology (KO) [BR:yrb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:yrb03400]
    UGYR_00095 (helD)
Enzymes [BR:yrb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     UGYR_00095 (helD)
DNA repair and recombination proteins [BR:yrb03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    UGYR_00095 (helD)
SSDB
Motif
Pfam: Helicase_IV_N UvrD-helicase AAA_19 UvrD_C UvrD_C_2 AAA_12 AAA_30 AAA_22 AAA_11 DEAD
Other DBs
NCBI-ProteinID: AKA36938
UniProt: A0A0A5FRD5
LinkDB
Position
24717..26771
AA seq 684 aa
MELKATSFGKHLAQHPYNRVRLLNAGIEVSGDKHQYLIPFNQLVNIQCKRGIVWGELEFE
LPEQQVVRLHGTEWQETQRFYHYLLGIWQQWSEEMSLISAEVLQTQVVAIRKIEQQDKWF
KRTELAQLQENIKQAFSALPIPVERLSEFECCREDYALCLRWLDQGHRSVVMRNRQWTDR
MLEQHREFFQQVETSPLNDSQCRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRQEAQ
PDQILLLAFGRQAADEMNARIKQQLGVDGIQAKTFHALALQIIQQGSRKVPVISKLESDS
EARRTLLIKSWQQQCSEKKAQAKGWRQWLTEELEWDVGDGNFWQDKRLAARLAGRLERWL
GLMRMHGGSQAEMIEQADDEVRDLFQKRVRLMAPLLKVWKNALKEEGAVDFSGLIHQAVN
LLAKGRFVSPWKHILVDEFQDISPQRAQLLSALRQQNTQTALFAVGDDWQAIYRFSGAEL
SLTTAFSHNFGEGAECALDTTYRFNDRIGEIANQFIQQNPYQLKKPLNSLTKGNKKSVTI
LPQEQLEPLLDKLSGYAKDNERIMILARYHHLRPDILQKAKTRWPKLNIDFMTIHASKGQ
QADYVIIAGLHQGNDGFPAQARESVLEEVLLPQPEDFPDAEERRLLYVAMTRAKHQVWLL
QDGERPSVFVSQLHEIGVPVQKKP
NT seq 2055 nt   +upstreamnt  +downstreamnt
atggaacttaaagcgacatctttcggcaagcatttggcacaacatccttataaccgggtg
cgtttattgaatgcgggcattgaggtgagcggtgataaacaccagtatttgatcccgttt
aatcagttggtcaacatccaatgtaaacgaggaattgtttggggtgagctagaatttgaa
ctgcctgagcagcaagtggttcggctgcatggtaccgagtggcaagaaacccagcgtttt
taccattatctattgggtatctggcagcaatggagcgaggaaatgagtttgatcagtgcc
gaggtactacaaactcaggtagtggcaatcaggaagatagaacagcaggataaatggttc
aagcgaactgaattggcgcaattgcaagagaatatcaaacaggctttcagcgcattacca
ataccagtggaacgcctgagtgagtttgagtgttgccgtgaagattatgccctttgtctg
cgttggctggatcaaggtcaccgcagtgttgtcatgcgtaatcggcaatggactgaccga
atgctggagcagcaccgcgaatttttccagcaggtggaaacctcgccgctgaatgattct
cagtgccgggctgttgtcaatggcgaggattcggtgttggtactggcgggtgctggcagt
ggtaaaacctcggtgttggtggcgagagccggatggttattacgccgtcaggaggctcag
ccagatcaaatcttgttgctggcatttgggcgacaggcggctgacgaaatgaacgctaga
attaagcagcaattgggtgtggacggtattcaggctaaaactttccacgctctggcgctg
caaatcattcagcaaggcagtcggaaagtgccagttatcagtaaattggagtctgatagc
gaggcgcgacgcacactgttgatcaaaagctggcagcagcaatgcagcgagaaaaaagcg
caggccaaagggtggcgacaatggctaacggaagaattggaatgggatgtcggcgacggc
aacttctggcaggataaacgtctggcagctcgattggctgggcgtttagaacgttggctt
gggctgatgcgaatgcacggcggcagtcaggcagaaatgattgaacaggctgacgacgaa
gtgcgcgatttattccaaaaacgtgttcggttaatggctcctttactaaaagtctggaaa
aatgccttaaaagaggaaggggcggttgatttctccggtttgattcatcaagcggtgaat
cttttggcaaaaggccgttttgtcagcccatggaaacatattttggtagacgagtttcag
gacatttcgccgcaacgggcgcagttgttgtccgctttacgccagcaaaatacccaaacg
gcgctgtttgccgtgggcgacgactggcaggctatttaccggtttagtggtgcagaactc
tcgctgacgactgcgtttagccacaattttggagagggtgcagagtgtgcgctggatacg
acttaccgcttcaacgatcgtattggtgaaattgccaaccagtttatccaacaaaatccc
taccagttaaagaaaccgctaaacagtctgaccaagggcaacaaaaaatcagtgacgatt
ttgccgcaggaacagttggagccgttactggataagctcagtggttatgccaaagataac
gagcggataatgattctggctcgctatcatcatttgcgtcccgatattttacagaaggca
aaaacccgctggcctaagctaaatatagattttatgactattcatgccagtaaaggtcag
caggcggattatgtgattattgctggtttgcatcagggtaacgatggattcccggcacag
gcgagagaatcggtgctggaagaggtgcttttgcctcagccggaagattttcctgatgcg
gaagagcggcggttactttatgtggccatgacgcgagctaaacatcaggtatggttacta
caggatggcgagcgtccttcggtttttgtcagccaattacatgaaataggtgtaccggta
cagaagaaaccttga

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