Yersinia ruckeri Big Creek 74 (serotype O2): UGYR_00235
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Entry
UGYR_00235 CDS
T03887
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
yrb
Yersinia ruckeri Big Creek 74 (serotype O2)
Pathway
yrb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yrb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UGYR_00235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yrb03019
]
UGYR_00235
03009 Ribosome biogenesis [BR:
yrb03009
]
UGYR_00235
Enzymes [BR:
yrb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
UGYR_00235
Messenger RNA biogenesis [BR:
yrb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
UGYR_00235
Ribosome biogenesis [BR:
yrb03009
]
Prokaryotic type
rRNA processing factors
UGYR_00235
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AKA36964
LinkDB
All DBs
Position
complement(55667..59128)
Genome browser
AA seq
1153 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSHYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQ
TPHYSVLRVRKGEEVPTLSYLLPKLHEEEMAQPLEEAPMERKRPEQPALATFSLPTEVPP
EAEPVTVAKPVAQPVAASAAQPGLFGRLMSGLKNLFAAPAEAEVKPQETEKTENTENRRQ
DRRNPRRQNNGRKDRGDRTPREGRENRESNRDNNTSTTRENTRENNRDGNREGREDQRRN
RRSNQPNTAVETVVENTENDKAQREGQQPRRERGDRQRRQRQAPQEVKAVEVIEVVGVVE
SVIPTEAVQPEQEERQQVMQRRQRRQLNQKVRIQSANDELNPVESTDSPTTAPAALIVQD
EVKLLAPSPATADEENSHERSANNENGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSAM
PLAGAFASPELASGKVWVHYPVTPPQEQQVAESTIENLTETAANLVAPIAAAQPEIAAVA
PVVVTPVAETSVETVIAAPVAFKHQPGGSSSSAAAVPGRAPVAAPVVEPVVAEPVVAEPI
VAEPVVATLETAVAPAVETVTTESVIETPVVETPAAEATEVAIEAVVAQEAVVEEAVVEE
AVTETVVILEPVTAEVETAAAAPALDVVVEKVTETVAAATPIDNVVVAEEPAAATVITAI
VTQPADHPEGVRFKHHAFAPMTKAPASVASAPQATTQGEWQRPSFDFAGKGSAGGHAAIS
QATAPVTKPQSVK
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaggaagagttgcgtgttgcccttgtagat
ggacagcggctttatgatctggatattgaaagtccgggccatgagcaaaaaaaagcgaat
atttacaaaggtaaaatcacccgaattgagccaagcctggaagccgcctttgttgattac
ggtgctgaaagacatggtttccttccattaaaagaaatctctcgcgagtacttcccaagt
cattattcttcccatggccgcccgaacatcaaagatgtattgcgcgaaggtcaggaagtt
attgttcaggttgataaagaagaacgtggcaacaaaggtgcagccttgaccacgttcatc
agtctggcgggtagctatttagttctgatgccaaataacccgcgtgctggtggtatttct
cgccgcatcgaaggtgatgaccgtaccgaactgaaagaagcgctttcttcattgcaatta
cctgatggcatgggtctgattgtccgcaccgctggcgtcggcaaatctgccgatgcgttg
caatgggatttgtcattccgcctgaagcactgggacgctatcaagaaagccgctgaaggc
cgtccagcgccgttcctgatccaccaggaaagtaacgttatcgtccgcgctttccgtgac
tatctgcggccggatatcggtgaaatcctgatcgataatccgaaggttctcgatttggcc
aaagaacatatcgccgccttgggtcgtccagatttcagcagcaaaattaaattgtacagc
ggcgagattccgttgttcagccattaccagattgaatcccagattgagtctgcgttccag
cgtgaagtgcgtctgccttccggtggttctattgttatcgataccactgaagcactgacc
gccattgatatcaactcagcccgcgcaactcgcggcggtgatatcgaagaaaccgcgttt
aataccaaccttgaagccgctgatgaaatcgctcgccaattacgtctacgtgacctgggt
ggattgattgttatcgactttatcgatatgacgccggttcgccatcagcgtgaagtggaa
aatcgtttacgtgatgccgtccgtcaggatcgcgcccgtattcagatcgggcgtatttcg
cgcttcggtttgttggaaatgtctcgtcagcgtctcagcccgtcattaggtgagtccagt
catcatgtgtgcccacgttgtagcggcaccggtactgtgcgtgataacgaatccttgtca
ttgtccattctgcgtctcattgaagaagaagcgctgaaggaaaacacccatgaagttcac
gctatcgttccggtacagattgcgtcctatctgctgaatgaaaaacgtgaatcagttaat
gccatcgagaagcgtcagggcggcgtgcgtgcggttatcgtgccaaatgaccagatgcaa
acaccacattactcagtactgcgtgtacgtaagggcgaagaagttccaaccctgagctac
ctgctaccaaaactgcacgaagaagaaatggcacaaccattggaagaagcgccaatggaa
cgcaaacgtccggaacaaccggcactggcgaccttctctctaccaaccgaagttccacct
gaagccgagccggtaaccgtggctaagccagtagcacagcctgtcgccgccagtgcagca
caaccaggtctgttcggtcgcttgatgagcggtttgaagaatctgtttgccgcgccagcc
gaagcggaagttaaaccgcaggaaaccgagaaaaccgaaaatactgaaaaccgccgtcag
gatcgtcgtaatccgcgccgccagaacaatggccgtaaagatcgtggcgatcgcacacca
cgcgaaggccgtgaaaatcgcgagagcaaccgtgataacaacacgtcgaccactcgtgag
aatacccgcgagaataatcgtgacggtaatcgcgaaggtcgtgaagatcaacgtcgcaat
cgtcgttcaaaccagccgaatactgcggtagaaaccgttgtagaaaatactgagaacgat
aaagcacaacgtgaagggcagcaaccgcgccgcgaacgaggtgatcgtcagcgccgtcaa
cgtcaggctccgcaggaagtgaaagcggtagaagttattgaagttgttggtgtagttgaa
tcggtaataccgactgaagcagtgcaacctgagcaggaagagcgccaacaggttatgcaa
cgccgtcaacgtcgtcagttgaaccaaaaagtacgaattcagtccgccaacgacgaactg
aatccggtggaaagtactgatagcccaaccactgcgcctgctgcactcatcgttcaagac
gaagttaaactgttagcaccatccccagcgactgcggatgaagagaacagtcacgaacgt
tcggccaacaatgagaatggtatgccgcgtcgctcgcgtcgctcaccgcgtcacctgcgt
gtgagtggtcaacgtcgccgtcgctatcgtgatgagcgttacccgacccaatcggctatg
ccactggcgggggcttttgcatcaccggaattggcatcaggtaaagtgtgggttcactac
cctgtgacaccaccgcaggaacagcaagttgctgaatccacgattgaaaatctgactgaa
actgccgctaacctggttgcaccgatagctgctgcgcagcctgaaattgctgctgtggca
ccggtagtcgtaactccggtcgctgaaacctcggttgaaaccgtgatagctgcaccagtc
gcattcaaacatcaacctggcggttcttcttcatctgctgccgccgtaccgggtcgtgct
ccggttgctgcaccagtcgttgagcctgttgttgctgaacctgttgttgctgaacctatt
gttgctgaacctgttgtcgcaactctggaaaccgcagtcgcaccagcggtcgaaaccgtg
actaccgagtcagtcattgagactcccgtcgttgaaacaccggctgctgaagcgactgaa
gttgcaattgaagctgtggtcgcacaagaagctgtagttgaagaagccgtagttgaagaa
gcggtaaccgaaactgttgttatcctggaaccagtaacagcagaagttgaaactgccgcg
gcggcaccagcacttgacgttgttgtggaaaaggtcactgaaactgtcgcggctgcaacg
cctatagataacgttgtcgtggctgaagaacccgcagcggccaccgtcatcaccgctatc
gtcacccagcctgcggatcatccagaaggcgtgcgttttaaacatcacgcgtttgcgcca
atgaccaaagcaccggcttcagtggcatcagcaccacaggctacaactcaaggtgaatgg
caacgcccttcctttgattttgccggtaaaggctctgctggcggacacgctgccattagc
caagcaacggcaccggttaccaagccgcagtccgtaaagtag
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