Yersinia ruckeri Big Creek 74 (serotype O2): UGYR_01955
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Entry
UGYR_01955 CDS
T03887
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
yrb
Yersinia ruckeri Big Creek 74 (serotype O2)
Brite
KEGG Orthology (KO) [BR:
yrb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yrb03019
]
UGYR_01955
Enzymes [BR:
yrb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
UGYR_01955
Messenger RNA biogenesis [BR:
yrb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
UGYR_01955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
NACHT
T2SSE
PhoH
ResIII
AAA_16
NTPase_1
TsaE
Motif
Other DBs
NCBI-ProteinID:
AKA39873
LinkDB
All DBs
Position
complement(449385..453227)
Genome browser
AA seq
1280 aa
AA seq
DB search
MLRDQQRLRRRLQGAGKITKPQELQTLVSTLEGEMALAMQRVTRRRTACPTISYPENLPV
SQKKADIYQAIRDHQVVIVAGETGSGKTTQIPKICLELGRGVKGVIGHTQPRRLAARTVA
NRIADELDTTLGGCVGYKVRFNDQVGENSLVKLMTDGILLAEIQQDRLLLQYDTLIIDEA
HERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSHHFNHAPIIEVSGRTYPVEVR
YRPIVDDADDVERDQLQAIFDAVDELGRESPGDILIFMSGEREIRDTADALNKLNLPHTE
VLPLYARLSNSEQNRVFQSHHGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSFRTK
VQRLPIEPISQASANQRKGRCGRVSDGICIRLYSEQDFLSRPEFTDPEILRTNLASVILQ
MTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAIQTAPNGHQQLTALGRQLAQLPVDP
RLARMVLQAQKHGCVREVMVITAALSIQDPRERPMDKQQASDEKHRRFADKESDFLAFVN
LWDYLKEQQKELSSAQFRKLCRSDYLNYLRVREWQDIYTQLRQVVRELGLPVNSEPSDYR
SVHTALLTGLLSHIGQKDADKQEYTGARNARFAIFPGSGLFKKPPKWAMVAELVETSRLW
GRIAARIEPEWIEPLAQHLVKHHYSEPHWEKAQGAVMANEKVTLFGLPIVAARKVNYGPI
DPPLSRELFIRHGLVEGDWQTRHAFFRENLKLLAEVEELEHKSRRRDILVDDDTLFNFYD
QRIGRDVVSARHFDRWWKTVSQTQPELLSFEKTMLIKDGANKVNPLDYPNFWYQGSLKLR
LSYQFEPGTDADGVTVHIPLPILNQIQDRGFDWQIPGVRRELVIALIKSLPKPIRRNFVP
APNYAEAFLARVTPLETGLLDALERELRRMTGVTVSRESWQWDQVPDHLRMTFRVVDDKN
HSLGEGKDLAALNIQLQGKVQETLSAVADDGLEQNDLHIWSFGDLPTCYAQRRGGYEVKA
YPALVDEKDSVAIRLFETETQQQQAMWQGTRRLLLLNIPSPIKYLHEKLPNKSKLGLYFN
SYGNVLDLIDDCIACGVDKLVAQYGGPVWQAEAFSRLQENVRAELNDTVVDIARQVEQIL
TTVFSINKRLKGRVDIALALALSDIKAQLSGLIYRGFVTNNGWKKLPDTLRYLNAIERRL
EKLAIDPHRDRAQMLRVEHVQQVWQQWRQKLPPDRSQDDEVKEIRWMIEELRVSLFAQQL
GTAYPVSEKRILQAIEQLSP
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgcttcgtgatcagcagcggctgcgacgccgtttgcaaggcgcaggtaaaattaccaaa
ccgcaggaactgcaaacacttgtctcgacccttgaaggtgaaatggcgcttgccatgcag
cgagttacccgccgcagaaccgcttgtccgaccatttcttacccagaaaacctgccggtc
agtcaaaaaaaagctgatatttatcaggctattcgcgatcatcaggtcgtgattgttgcc
ggggaaacggggtccggtaagacgactcaaatccctaaaatctgtctggaattagggcgc
ggcgtcaaaggggttatcggtcatacgcaaccacgtcgtttggcggcacggacggtggcc
aaccgcattgccgatgagttggacacgactcttggcggctgtgtcggttataaagtccgt
tttaacgatcaagtgggcgaaaactcgctggttaaactgatgactgacggtattctgctg
gctgagattcagcaagatcgcctgctgttacagtacgataccctgattattgatgaggct
catgaacgcagtctgaatatcgactttattctgggttatctacgggaattactgccaaaa
cgaccggatctcaaggtcatcattacctctgcgaccattgatccgcagcgtttctcgcat
catttcaatcatgcgccgattatcgaagtatctgggcgaacttatccggttgaagtgcgt
tatcgcccgattgtcgatgatgcggatgacgtagaaagagaccagctacaggctatcttt
gacgccgtagatgagcttggtcgggaaagtccaggtgatattctgatctttatgagtggc
gagcgggagattcgcgatacggcggatgcgctgaataaacttaatcttcctcataccgaa
gtgctaccgctgtatgcccgcttatcgaatagtgagcaaaatcgggtatttcagtctcat
cacgggcgacgcattgttctggctaccaatgtggcggaaacctcactgactgtgccaggg
attaaatatgttatcgatcccggaacggcgcgtatcagtcgttatagtttccgtaccaaa
gtgcaacgtttaccgattgaaccgatttcgcaggcctcggccaatcagcggaaagggcgc
tgcggtcgtgtgtccgatggtatttgtatccgactgtattccgagcaggatttcctctct
cgtccggaatttaccgatccagaaattttgcgcaccaatcttgcatcagtcattctgcaa
atgacctcacttggattgggtgatattgccgcatttccatttgtagaagcgccggataaa
cgcaatattcaggatggtgtacggctactggaagagcttggcgcaatccagaccgccccg
aatgggcatcaacaactgacagcgcttggacgtcagttggcgcaactaccggtcgatccg
cgcttggcgcgcatggtattgcaagcccagaagcatggttgtgtgcgcgaagtgatggtg
attactgccgcgctatcgattcaggatcctcgcgaacgtcctatggataagcaacaggcc
tctgatgagaagcaccgtcgtttcgcggataaagaatcggatttcctcgctttcgtcaat
ctatgggattacctgaaagaacagcaaaaagagctgtcttccgcccaattccgtaaattg
tgtcgtagtgattatctgaattatctgcgggttcgtgaatggcaagatatctatacccaa
ctgcgtcaggttgtcagagagctagggttaccagttaatagcgagccatcggattatcgt
agtgtgcatacggcattactgacgggtttattatcccatatcggtcagaaagatgcggat
aagcaagaatacaccggtgcgcgtaatgcccgctttgccatattccccggttccggtttg
ttcaagaaaccacctaagtgggcgatggtcgccgaactggtagaaaccagccgtttgtgg
gggagaatcgctgcccgtattgaaccggaatggattgagccattggcgcagcatttggtt
aagcatcattacagcgagccgcattgggagaaagcccaaggggcagtgatggccaacgag
aaggtcacgctgttcggcctaccgattgtggccgcccgcaaggtgaattatggcccaatt
gatccgccattatctcgcgagctgttcattcgacatgggctggtggagggcgactggcag
acgcgtcacgctttcttccgtgagaacctcaaattgctggccgaggttgaagagctggag
cacaaatctcgccgtcgagatattctggttgatgacgatacgctgttcaatttctatgat
cagcgcattggtcgtgatgtggtttcagcccgtcattttgatcgctggtggaagaccgtc
agtcagacgcagcctgaattgctgagttttgaaaaaaccatgctgattaaagacggtgcc
aataaagttaatccgttagattacccaaatttctggtatcagggcagtttgaagctacgt
ctttcttatcagtttgaaccaggaaccgatgctgatggcgtgacggtacatattccgttg
ccgatcctgaatcaaattcaggatcgcggttttgactggcagattcctggtgttcgccgg
gagttggtcatcgcgctgataaaatccttaccaaaaccgatacggcgtaattttgtaccc
gctccgaattatgccgaggcatttttggcgcgggtaacaccgctagaaacgggcttactg
gatgcactagaacgtgaactgcgtcgcatgacaggcgtgacggtgtcacgtgaaagctgg
caatgggatcaggttcccgatcatttgcggatgacatttcgtgtcgtagacgataagaat
cacagcctaggggaaggtaaagacctggcagcgctgaacattcagttacagggaaaagtg
caggaaaccctgtcggcggttgcagacgatgggctggagcagaacgacttgcatatctgg
agcttcggcgatctgcccacctgctatgcgcagcgtcgtggtggttatgaagtcaaagcc
tatccggcattggtggatgaaaaagacagtgtggctattcggctatttgaaaccgaaacc
cagcagcagcaagcgatgtggcaaggaactcgccgcctactgttgctgaatattccttcg
ccgataaagtacttgcacgaaaagttaccgaataaatccaaactgggcctgtatttcaac
agctacggtaatgtattggatttaatcgatgattgtatcgcctgtggcgtggataaattg
gtagcacaatacggcgggccggtttggcaagcggaagcgttcagccggttgcaggaaaac
gtacgagccgaactgaatgacaccgtggtggatattgcccggcaggtcgagcaaattttg
accacggtattcagtattaataaacgcctcaaggggcgggtggatattgcgctggcgttg
gcattatccgatattaaagcgcagctttcggggctgatataccgaggttttgtcaccaat
aatggctggaaaaaactgcctgatactctgcgttatttgaatgccattgaacgtcgattg
gagaaactggcgattgatcctcatcgggatcgggcacaaatgctgcgagtcgagcatgtg
cagcaggtttggcagcaatggcggcaaaaattgccaccagaccggtcacaggatgatgag
gtaaaagaaatccgctggatgattgaagagttgcgggtgagcttgtttgctcagcagttg
ggcacggcttatccggtatcggagaaacgtatcttgcaggctatcgagcagctttccccg
taa
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