Yersinia ruckeri Big Creek 74 (serotype O2): UGYR_06830
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Entry
UGYR_06830 CDS
T03887
Symbol
recD
Name
(GenBank) exonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
yrb
Yersinia ruckeri Big Creek 74 (serotype O2)
Pathway
yrb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yrb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
UGYR_06830 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yrb03400
]
UGYR_06830 (recD)
Enzymes [BR:
yrb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
UGYR_06830 (recD)
DNA repair and recombination proteins [BR:
yrb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
UGYR_06830 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
Viral_helicase1
NAT10_TcmA_helicase
AAA_11
SH3_13
AAA_22
UvrD-helicase
SLFN-g3_helicase
AAA_16
UvrD_C
PhoH
nSTAND3
T2SSE
CbiA
AAA_28
MukB
Flavi_DEAD
TrwB_AAD_bind
SRP54
DO-GTPase1
AAA
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AKA38133
UniProt:
A0A085UBB8
LinkDB
All DBs
Position
complement(1474734..1476578)
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AA seq
614 aa
AA seq
DB search
MIRLLEQAVSDKLLRPLDVQFARMIARDDEPLMQLAAAYLSAETGAGHVCLSLDRLHPDR
LFGGRQPLLAQSLWQAAGKPELVQWQAGLRASDAVSDGSLPTPLVLQQDRLYLQRMWQCE
GEVAEFISHAEANEVIDKEKLKDILNNLFGASSTEIDWQKVAAAVAVTRRISVISGGPGT
GKTTTVAKLLTALVQLNEGRRLRIQLAAPTGKAAARLTESLGKASRQLPLSESERKLFPD
QASTLHRLLGAQPNSQRLRYHQGNPLNLDVLVVDEASMVDLPMMAKLIAALPAKAQVIFL
GDRDQLASVEAGAVLGDICRLVESGYSPTRAEELSELTGCSLQGKVAEKTATIRDSLCLL
RKSYRFDEQSGIGQLALAVNAGNPKQALSVFQGNYADIERFPLSDTEDYQRLLQDSVAGY
QHYLQRVAEEANPVAILTEFSRYQLLCALRTGPFGVGGLNERIEQMLNKKGLIRRIPGPS
GRWYPGRPIMIDRNDSALGLFNGDIGIALYDADGELRVHFHLPDGSIKSVQPSRLPSHET
AYVMTVHKSQGSEFEHTALILPNYFLPVVTRELVYTAITRARKRLTLYCSDSVLTSAIRT
PTQRRSGLVERLMQ
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgataagacttttggaacaagcggttagtgacaaactgctgcgacctttagatgttcag
tttgcccgcatgatagccagagatgacgaaccgttaatgcaactggcagcggcatattta
agtgcggagactggggcagggcatgtttgtctatctttagaccggttacatccggatcgg
ctctttggtggccgccagcctctattggcacaatctttatggcaagcagcaggaaaacca
gaattagtccagtggcaggcaggtctaagggcatcggatgcagtcagcgacggttccttg
ccgactccacttgtgttgcagcaggatcgcctgtatttacagcgaatgtggcagtgcgag
ggtgaggttgccgagtttatttctcacgctgaagccaatgaagttattgataaagaaaag
ttaaaagatattttgaataacctttttggcgcatcatccactgaaattgactggcaaaaa
gtcgcggcagccgttgcggttactcggcgcatttcagttatttctggtgggccgggaacc
ggtaaaacgacgacggtagccaaattgctcacggctttggttcaattaaatgaaggtcga
cgactgcgaattcaacttgctgctccgacgggtaaagcggctgcgcgattaactgaatca
ttaggcaaagccagtcgtcaattaccgttgagtgagagcgagcggaaactttttccagat
caggcctctacgttacatcgtctactcggtgctcagccaaatagccagcgtttacgttat
catcagggaaatccgttaaatctggatgtactggtagttgatgaagcctcaatggttgat
ttaccaatgatggcgaaactcattgcggcattgccagcgaaggctcaagtgatttttctc
ggtgatcgggatcaattagcatcagttgaagctggcgcagtattgggtgatatctgccgg
ttggttgagtcgggttacagccccactcgagctgaagaattaagcgagctaaccggctgc
tcgcttcaaggaaaggtggcggagaaaacagccacaattcgcgatagcttatgtctactg
cgtaaaagttaccgctttgatgagcaatctggtattggtcagttggctctggcagttaac
gcagggaacccgaaacaagcattgtctgtgtttcaggggaattatgctgatatcgaacgt
ttccctttatcagataccgaagattatcagagattgttacaggacagcgtcgctggttat
caacactatctgcaacgggttgccgaagaggcgaatcctgttgccatattgacggagttt
agtcgctatcaactactttgtgcgctacgaactgggccatttggtgtgggtggtcttaat
gaacgtattgaacagatgctgaataagaaaggtttgatacgccggataccaggtccatcg
ggtcgatggtatcccggtaggccgattatgattgaccgaaatgatagtgcactggggtta
tttaacggtgatatcggtattgcattgtatgacgcagacggtgagcttcgagtccacttc
cacctgcctgacggcagtataaaatcagttcaaccgagccgcttgccaagccatgaaact
gcgtatgtaatgacggtacataagtctcaaggatctgagtttgaacataccgcactgata
ttgccaaactatttcttacctgtagtgacccgggaactggtctataccgcgataacccgt
gcacgtaagcggttgacgctctattgctccgactcggtattgaccagtgcaatacggacg
ccgactcagagacgaagcggtttggttgagcgtttaatgcagtaa
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