Yersinia ruckeri Big Creek 74 (serotype O2): UGYR_08215
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Entry
UGYR_08215 CDS
T03887
Symbol
gabD
Name
(GenBank) succinate-semialdehyde dehydrogenase
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
yrb
Yersinia ruckeri Big Creek 74 (serotype O2)
Pathway
yrb00250
Alanine, aspartate and glutamate metabolism
yrb00310
Lysine degradation
yrb00350
Tyrosine metabolism
yrb00650
Butanoate metabolism
yrb00760
Nicotinate and nicotinamide metabolism
yrb01100
Metabolic pathways
yrb01120
Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:
yrb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
UGYR_08215 (gabD)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
UGYR_08215 (gabD)
00310 Lysine degradation
UGYR_08215 (gabD)
00350 Tyrosine metabolism
UGYR_08215 (gabD)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
UGYR_08215 (gabD)
Enzymes [BR:
yrb01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
UGYR_08215 (gabD)
1.2.1.20 glutarate-semialdehyde dehydrogenase
UGYR_08215 (gabD)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
UGYR_08215 (gabD)
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Motif
Pfam:
Aldedh
DUF6515
Motif
Other DBs
NCBI-ProteinID:
AKA38383
UniProt:
A0A0A5FJ87
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Position
complement(1785593..1787062)
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AA seq
489 aa
AA seq
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MSSQTYLDHPLQQHELFKTGYFVGGKWYQAAETFDVVNPATGEMVAQVAKAGKRETEAAI
KAAHDAFPAWRKTPAKQRAEILQRWYQLMVENRDYLAALMVAEQGKPLKEALGEVEYAAS
FIQWFSEQAKRANGEIIPPTKAGSRIFATREPVGVVAAITPWNFPLAMLTRKLGPALAAG
CTGLIKPANNTPLSAFALLALAEKAGVPAGVLNGVAGDTQAISDAIMVSPEVRKISFTGS
TEVGKTLMRNAAETVKKISMELGGNAPYIVFDDADLDTAIQGAMACKFRNAGQVCVCVNR
FYIQDGIYEEFVTRLATEVKKLKVGNGMDDGVNLGPLINSAGVKKVEEQVKDALAKGGRL
LAGGERHALGGNFFQPTVIADATEEMKVADEETFGPLAACFRFTSEEEVIERANNTPFGL
AAYFYTQNLKRVFRVSEALESGMIGVNESSVSTELAPFGGVKESGLGREGSVLGLEEFMQ
VKTLHLGNL
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcacaaacctatctggatcacccgctacagcaacacgaactgtttaaaactggc
tattttgtcggaggaaaatggtatcaggcggcggaaacatttgatgtagttaacccggct
accggtgaaatggttgctcaggtggcaaaagcgggtaaacgtgaaacggaagcggcgatt
aaagcggctcatgacgcttttccagcttggcgaaaaacacccgctaaacagcgtgctgaa
atcttgcaacgttggtatcaactgatggtagagaatcgtgattatctggcggcattgatg
gttgcggaacaaggtaagccattgaaagaagctctaggcgaggtggaatatgctgccagc
ttcattcaatggtttagcgaacaggccaaacgagccaacggcgagattattccaccgact
aaagcaggctcgcggatatttgccacccgcgaacccgtgggcgtagtggcggcgattaca
ccgtggaatttcccgctggcgatgttgacccgtaaacttggccccgcgctggcagcaggc
tgtaccggcttgattaaacccgccaataacacaccgctttcagcgtttgccttactggct
ctggctgaaaaagctggggttccggccggggtgttaaacggtgtagccggtgatactcag
gcgatcagtgatgccattatggtcagccctgaggtgcgcaaaatttccttcaccggctcc
accgaggtgggcaagacattgatgcgtaacgccgctgaaacggtgaaaaaaatctcaatg
gagttaggcgggaatgcgccttatatcgtctttgatgatgccgatctggatacggcgatt
caaggtgccatggcgtgtaaattccgcaatgcggggcaggtttgcgtatgtgttaaccgt
ttttatattcaggatggcatttacgaagaatttgtcacccgtttggcgacggaagtcaaa
aaactgaaagtgggtaacggcatggatgatggcgtcaatcttgggccactgatcaattct
gccggtgtgaagaaggtagaggagcaagttaaagatgcgctggcgaaaggcggacgtttg
ttggccggtggtgaacgtcatgcactgggtgggaacttcttccagccaacggtgattgct
gatgcgactgaagagatgaaagtggctgatgaagaaaccttcgggccattagctgcctgt
tttcgttttaccagtgaagaggaagtgattgagcgcgccaataatacgccattcggcctg
gcggcttacttctacacccaaaatctgaaacgggtatttcgcgtctcggaagcattggaa
agcggcatgattggtgttaacgaaagctcggtttctaccgagttggcaccttttggtggt
gtaaaagagtcggggttgggacgagaaggctccgtgctggggttagaggagtttatgcaa
gtcaaaaccctgcatttaggtaatctgtaa
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