Yersinia ruckeri Big Creek 74 (serotype O2): UGYR_08280
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Entry
UGYR_08280 CDS
T03887
Name
(GenBank) regulatory protein CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
yrb
Yersinia ruckeri Big Creek 74 (serotype O2)
Brite
KEGG Orthology (KO) [BR:
yrb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yrb03019
]
UGYR_08280
Messenger RNA biogenesis [BR:
yrb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
UGYR_08280
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Paralog
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GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Claudin_2
DUF6377
Motif
Other DBs
NCBI-ProteinID:
AKA38396
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All DBs
Position
complement(1802800..1804716)
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AA seq
638 aa
AA seq
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MRFTTKLSAFMALLVVLAMCLMLLGSTFSFFYLCQKKMEHRLQTIVTAYDQSLLTEPPEV
PRAWLPLMMRAIGVIEISVENAHHQFYHLALPPTYTSWDNNSSYRELSIPLLQQPGGVMR
LTYIDPLTSYTRSMYAAVILSLAVGVIAIIMFLSFRWLREQTAGEEQLEQRARRILQGER
ENVMRSENHEWPPYASHALDHLLIDLAEMREERSQLDTLIRSYAAQDAKTGLNNALFFDN
QLTTQLEEPGAHGVVMMVRLPDFDALNEQYEETQVQELMHSMVNLLSTFVDRYLSALLAH
YTNSDFAILLPHKTLKEADVMAAQLVHLAGAMPVLPIIDRDALLNIGIVAYRHGQTAEQI
MDNAGQATKNAALYGGNSWYVYDHQVPEKGRGSVKWRTLLEQTLVNGGPRLYQKPVITCD
GKIHHREIISRIFDGEQELIAAEFTPLVRLLGLSERYDRQKISRIIPLLALWPNETLAFS
VSVDSLLQRPFQRWLRDTILQCRKSYRQRIIFELAEADVCHHIDRLRPVIRLLLGLGCRL
MVSQAGLTVVSTTYIKTLRVEMIKLHPGLVRGIDTRFENQLFVKSLTGACAGTNVKVFAA
EVVTREEWETLRQKGVYGGQGHFFAAPTFLNLEQKKYS
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgcgatttacaaccaaactttctgcgtttatggcgttactggtcgtactggccatgtgt
ctaatgttgctagggagcacgtttagttttttctacttatgtcagaaaaaaatggagcat
cgccttcagactattgtgacggcctacgaccaatccttactcactgaaccaccggaagtc
ccgcgagcctggctgccgttgatgatgagggctattggcgttattgaaatcagtgtagaa
aatgcccaccaccaattttatcatctggcacttcctccgacttacacttcctgggataac
aatagcagttaccgcgaactttccatccctctattgcagcagcccggcggcgtaatgcgc
ctgacttatattgatccactaaccagctacacccgctcgatgtatgccgcagttattttg
tctctggcggtgggggttattgccatcattatgtttctgagttttcgctggctgcgggaa
caaacggccggagaggagcaactcgaacagcgagcgcggagaattctccaaggcgagcgt
gagaatgtgatgcgcagtgaaaatcacgagtggccaccctatgccagccatgctcttgat
cacttattgatagatctggctgagatgcgcgaagaacgcagccaattggacacactgatt
cgttcttatgccgcacaagacgcaaaaaccggcctgaataacgctttgttttttgataat
cagctgacgacacagttggaggagccgggtgctcatggcgtggtgatgatggtacggctg
cctgacttcgatgctttgaatgagcagtatgaggaaactcaggtacaggaattgatgcac
tcgatggtcaatttactttcgacctttgttgaccgctatctatccgcgttattggcgcac
tacaccaacagcgattttgccattttgctgccgcataaaaccctgaaagaggccgatgtg
atggcggcgcagttggttcatctggctggagccatgccagtactgccaatcatagatcgt
gatgcattactcaatattggcattgtggcttaccgtcatgggcaaacggcggagcaaatt
atggataatgctggacaagccacgaaaaatgcggcgttgtatggcggcaatagttggtat
gtgtatgaccatcaggtaccggagaaaggtcgcggtagcgttaagtggcggacgctactt
gaacaaacgctggttaatggcggcccgcgcctttaccaaaaaccggttattacctgcgac
ggaaagattcatcaccgtgaaattatcagccggatatttgatggtgaacaggagttgatt
gcggcggaatttacgcctctggtgcgcttactgggattgtctgagcgctatgatcggcaa
aaaatcagtcggataattcctttattagcgttatggccaaacgaaaccctggcattttcc
gttagcgttgattcattattacaacgacctttccagcgttggttgcgggatacaatatta
cagtgccgaaaaagttatcgtcagcgcattatctttgagctggcagaggctgacgtatgt
caccatattgatcggctgcgacctgttatccgtttgttactcggattaggttgtcgattg
atggtttctcaggcgggattgacggtggtcagcacgacttatatcaagaccctgcgagtt
gaaatgatcaaattgcacccaggattggttagaggtattgatacacgctttgaaaatcag
ctatttgtgaaaagtcttactggtgcctgtgccggtacgaatgttaaagtttttgctgcg
gaagtggtcaccagggaagaatgggaaacgttgcgacagaaaggggtttatggtggacag
ggtcacttttttgctgcgccgacgtttttaaacctcgagcagaaaaaatattcgtaa
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